Myl3 (myosin light chain 3) - Rat Genome Database

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Gene: Myl3 (myosin light chain 3) Heterocephalus glaber
Analyze
Symbol: Myl3
Name: myosin light chain 3
RGD ID: 18930172
Description: ENCODES a protein that exhibits cytoskeletal motor activity (ortholog); INVOLVED IN cardiac muscle contraction (ortholog); skeletal muscle tissue development (ortholog); PARTICIPATES IN prostaglandin I2 signaling pathway; ASSOCIATED WITH cardiomyopathy (ortholog); chondrodysplasia Blomstrand type (ortholog); Familial Amyloid Polyneuropathies (ortholog); FOUND IN myosin complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473074,404,915 - 74,408,752 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473074,405,054 - 74,408,567 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
A band  (IEA)
I band  (IEA)
myosin complex  (IEA,ISO)
myosin II complex  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473074,404,915 - 74,408,752 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473074,405,054 - 74,408,567 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MYL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38346,857,872 - 46,882,182 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl346,835,111 - 46,882,178 (-)EnsemblGRCh38hg38GRCh38
GRCh37346,899,362 - 46,904,934 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,874,361 - 46,879,977 (-)NCBINCBI36Build 36hg18NCBI36
Build 34346,874,370 - 46,879,935NCBI
Celera346,837,863 - 46,843,479 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef346,942,461 - 46,948,077 (-)NCBIHuRef
CHM1_1346,849,457 - 46,855,073 (-)NCBICHM1_1
T2T-CHM13v2.0346,874,270 - 46,898,580 (-)NCBIT2T-CHM13v2.0
Myl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,592,746 - 110,598,870 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9110,570,929 - 110,598,866 (+)EnsemblGRCm39 Ensembl
GRCm389110,763,678 - 110,769,802 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,741,861 - 110,769,798 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,666,185 - 110,672,298 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369110,608,497 - 110,614,610 (+)NCBIMGSCv36mm8
Celera9110,493,398 - 110,499,489 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.69NCBI
Myl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88119,617,077 - 119,623,215 (+)NCBIGRCr8
mRatBN7.28110,738,669 - 110,744,814 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,738,661 - 110,744,816 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8116,353,285 - 116,359,407 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08114,552,491 - 114,558,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08112,395,292 - 112,401,414 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08119,030,852 - 119,036,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8119,030,875 - 119,036,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08118,370,030 - 118,376,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48115,140,705 - 115,146,827 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18115,160,166 - 115,166,273 (+)NCBI
Celera8110,021,445 - 110,027,566 (+)NCBICelera
Cytogenetic Map8q32NCBI
Myl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542025,305,759 - 25,312,271 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542025,308,513 - 25,311,959 (+)NCBIChiLan1.0ChiLan1.0
MYL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2246,814,351 - 46,855,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1346,816,862 - 46,860,077 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0346,758,058 - 46,782,425 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1347,859,467 - 47,865,084 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl347,859,467 - 47,865,084 (-)Ensemblpanpan1.1panPan2
MYL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,941,617 - 41,947,085 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,933,105 - 42,073,779 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,857,795 - 41,863,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02042,424,129 - 42,429,604 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2042,423,791 - 42,429,606 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12041,665,759 - 41,671,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,066,707 - 42,072,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02042,347,703 - 42,353,170 (+)NCBIUU_Cfam_GSD_1.0
Myl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,100,747 - 201,105,928 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936596649,875 - 655,110 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936596649,887 - 655,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,707,371 - 29,735,586 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,730,271 - 29,735,616 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,978,399 - 32,983,747 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,263,536 - 8,272,229 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl228,261,206 - 8,269,185 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041158,859,015 - 158,883,595 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020468   ⟹   ENSHGLP00000020266
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473074,404,915 - 74,408,752 (+)Ensembl
RefSeq Acc Id: XM_004835005   ⟹   XP_004835062
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473074,405,054 - 74,408,567 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004835062 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98664 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020266
  ENSHGLP00000053068
  ENSHGLP00100005170
GenBank Protein JAN98119 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004835062   ⟸   XM_004835005
- UniProtKB: G5ANQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000020266   ⟸   ENSHGLT00000020468


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014498 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100003920 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000020468 ENTREZGENE
  ENSHGLT00000073546 UniProtKB/TrEMBL
  ENSHGLT00100005250 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
KEGG Report hgl:101716754 UniProtKB/TrEMBL
NCBI Gene Myl3 ENTREZGENE
PANTHER MYOSIN LIGHT CHAIN 1, 3 UniProtKB/TrEMBL
  MYOSIN LIGHT CHAIN 3 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0P6J3W7_HETGA UniProtKB/TrEMBL
  G5ANQ4 ENTREZGENE, UniProtKB/TrEMBL