Uck1 (uridine-cytidine kinase 1) - Rat Genome Database

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Gene: Uck1 (uridine-cytidine kinase 1) Heterocephalus glaber
Analyze
Symbol: Uck1
Name: uridine-cytidine kinase 1
RGD ID: 18930147
Description: ENCODES a protein that exhibits cytidine kinase activity (ortholog); INVOLVED IN CTP salvage (inferred); UMP salvage (inferred); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,490,086 - 4,494,924 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,490,118 - 4,494,707 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
CTP salvage  (IEA)
UMP salvage  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Uck1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,490,086 - 4,494,924 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,490,118 - 4,494,707 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UCK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,523,801 - 131,531,263 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,523,801 - 131,531,264 (-)EnsemblGRCh38hg38GRCh38
GRCh379134,399,188 - 134,406,650 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369133,389,012 - 133,396,476 (-)NCBINCBI36Build 36hg18NCBI36
Build 349131,428,744 - 131,436,209NCBI
Celera9104,939,363 - 104,946,841 (-)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9103,893,800 - 103,901,279 (-)NCBIHuRef
CHM1_19134,548,581 - 134,556,053 (-)NCBICHM1_1
T2T-CHM13v2.09143,736,763 - 143,744,224 (-)NCBIT2T-CHM13v2.0
Uck1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,145,014 - 32,150,117 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,145,014 - 32,150,171 (-)EnsemblGRCm39 Ensembl
GRCm38232,255,002 - 32,260,105 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,255,002 - 32,260,159 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,110,522 - 32,115,625 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,077,011 - 32,082,070 (-)NCBIMGSCv36mm8
Celera231,959,332 - 31,964,435 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Uck1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,936,328 - 35,942,213 (-)NCBIGRCr8
mRatBN7.2315,538,580 - 15,544,465 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,538,591 - 15,544,465 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,607,992 - 18,613,850 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,192,985 - 27,198,843 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,443,461 - 25,449,354 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,271,874 - 11,277,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,271,885 - 11,277,757 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,620,744 - 16,626,627 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,366,634 - 11,372,517 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1311,264,015 - 11,268,800 (-)NCBI
Celera310,283,446 - 10,289,273 (-)NCBICelera
Cytogenetic Map3p12NCBI
Uck1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555131,203,934 - 1,208,724 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555131,203,934 - 1,208,720 (-)NCBIChiLan1.0ChiLan1.0
UCK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2117,823,442 - 7,830,941 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan197,825,808 - 7,832,527 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,646,056 - 102,653,525 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19131,285,877 - 131,293,338 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,285,877 - 131,293,338 (-)Ensemblpanpan1.1panPan2
UCK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,609,972 - 52,615,655 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,609,313 - 52,614,622 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha951,878,198 - 51,883,925 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,513,447 - 53,519,165 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,513,484 - 53,519,162 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,291,329 - 52,297,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,610,265 - 52,615,976 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,704,647 - 52,710,374 (+)NCBIUU_Cfam_GSD_1.0
Uck1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,499,351 - 198,502,882 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648718,267,885 - 18,271,423 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648718,267,878 - 18,271,406 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,448,365 - 271,453,816 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,448,362 - 271,453,811 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,456,743 - 305,462,182 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UCK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,612,306 - 6,634,326 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl126,612,378 - 6,618,968 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,922,082 - 8,946,096 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000020805   ⟹   ENSHGLP00000020603
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247604,490,086 - 4,494,924 (+)Ensembl
RefSeq Acc Id: XM_004849090   ⟹   XP_004849147
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,490,118 - 4,494,707 (+)NCBI
RefSeq Acc Id: XM_021261862   ⟹   XP_021117521
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,490,118 - 4,494,707 (+)NCBI
RefSeq Acc Id: XM_021261863   ⟹   XP_021117522
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,490,118 - 4,493,697 (+)NCBI
RefSeq Acc Id: XM_021261864   ⟹   XP_021117523
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,490,118 - 4,493,905 (+)NCBI
RefSeq Acc Id: XM_021261865   ⟹   XP_021117524
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247604,490,118 - 4,493,701 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004849147 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117521 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117522 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117523 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117524 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020603
GenBank Protein JAO00537 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004849147   ⟸   XM_004849090
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J8H0 (UniProtKB/TrEMBL),   G5AT51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021117521   ⟸   XM_021261862
- Peptide Label: isoform X2
- UniProtKB: G5AT51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021117523   ⟸   XM_021261864
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021117524   ⟸   XM_021261865
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021117522   ⟸   XM_021261863
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000020603   ⟸   ENSHGLT00000020805


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014736 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020805 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  PRK/URK UniProtKB/TrEMBL
  Uridine_kinase-like UniProtKB/TrEMBL
KEGG Report hgl:101720074 UniProtKB/TrEMBL
NCBI Gene Uck1 ENTREZGENE
PANTHER PTHR10285:SF66 UniProtKB/TrEMBL
  URIDINE KINASE UniProtKB/TrEMBL
Pfam PRK UniProtKB/TrEMBL
PRINTS URIDINKINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6J8H0 ENTREZGENE, UniProtKB/TrEMBL
  G5AT51 ENTREZGENE, UniProtKB/TrEMBL