Gpat4 (glycerol-3-phosphate acyltransferase 4) - Rat Genome Database
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Gene: Gpat4 (glycerol-3-phosphate acyltransferase 4) Heterocephalus glaber
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Symbol: Gpat4
Name: glycerol-3-phosphate acyltransferase 4
RGD ID: 18930008
Description: ENCODES a protein that exhibits glycerol-3-phosphate O-acyltransferase activity (ortholog); INVOLVED IN acyl-CoA metabolic process (ortholog); diacylglycerol metabolic process (ortholog); fatty acid metabolic process (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: AGPAT6; glycerol-3-phosphate acyltransferase 6
Orthologs:
Homo sapiens (human) : GPAT4 (glycerol-3-phosphate acyltransferase 4)  HGNC  Alliance
Mus musculus (house mouse) : Gpat4 (glycerol-3-phosphate acyltransferase 4)  MGI  Alliance
Rattus norvegicus (Norway rat) : Gpat4 (glycerol-3-phosphate acyltransferase 4)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gpat4 (glycerol-3-phosphate acyltransferase 4)
Pan paniscus (bonobo/pygmy chimpanzee) : GPAT4 (glycerol-3-phosphate acyltransferase 4)
Canis lupus familiaris (dog) : GPAT4 (glycerol-3-phosphate acyltransferase 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gpat4 (glycerol-3-phosphate acyltransferase 4)
Sus scrofa (pig) : GPAT4 (glycerol-3-phosphate acyltransferase 4)
Chlorocebus sabaeus (African green monkey) : GPAT4 (glycerol-3-phosphate acyltransferase 4)
more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247801,643,030 - 1,691,517 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Gpat4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247801,643,030 - 1,691,517 (-)NCBI
GPAT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl841,577,187 - 41,625,001 (+)EnsemblGRCh38hg38GRCh38
GRCh38841,578,190 - 41,625,001 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37841,435,702 - 41,482,520 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36841,554,876 - 41,597,971 (+)NCBINCBI36hg18NCBI36
Celera840,384,627 - 40,431,440 (+)NCBI
Cytogenetic Map8p11.21NCBI
HuRef839,963,590 - 40,010,405 (+)NCBIHuRef
CHM1_1841,484,058 - 41,530,844 (+)NCBICHM1_1
Gpat4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39823,661,281 - 23,698,469 (-)NCBI
GRCm38823,171,265 - 23,208,453 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl823,171,265 - 23,208,346 (-)EnsemblGRCm38mm10GRCm38
MGSCv37824,283,418 - 24,318,925 (-)NCBIGRCm37mm9NCBIm37
MGSCv36824,638,491 - 24,673,891 (-)NCBImm8
Celera824,669,180 - 24,705,196 (-)NCBICelera
Cytogenetic Map8A2NCBI
Gpat4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01673,615,949 - 73,649,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1673,615,949 - 73,649,767 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01673,249,352 - 73,282,223 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41673,276,423 - 73,310,177 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11673,276,687 - 73,309,892 (+)NCBI
Celera1666,711,037 - 66,744,848 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Gpat4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555361,265,409 - 1,313,326 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555361,266,920 - 1,313,765 (-)NCBIChiLan1.0ChiLan1.0
GPAT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1838,271,519 - 38,318,587 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl838,271,808 - 38,318,587 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0840,822,736 - 40,869,744 (+)NCBIMhudiblu_PPA_v0panPan3
GPAT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1623,911,972 - 24,010,152 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11623,990,142 - 24,022,822 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Gpat4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936785967,871 - 1,007,761 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPAT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1710,691,751 - 10,725,005 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11710,705,998 - 10,724,486 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,138,395 - 12,156,886 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPAT4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl839,557,275 - 39,601,567 (+)Ensembl
ChlSab1.1839,557,262 - 39,598,544 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004855299   ⟹   XP_004855356
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247801,643,030 - 1,691,517 (-)NCBI
RefSeq Acc Id: XM_004855300   ⟹   XP_004855357
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247801,643,030 - 1,685,280 (-)NCBI
RefSeq Acc Id: XM_021236766   ⟹   XP_021092425
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247801,643,030 - 1,685,280 (-)NCBI
RefSeq Acc Id: XM_021236767   ⟹   XP_021092426
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247801,643,030 - 1,685,280 (-)NCBI
RefSeq Acc Id: XM_021236768   ⟹   XP_021092427
RefSeq Status:
Type: CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247801,643,030 - 1,685,280 (-)NCBI
RefSeq Acc Id: XR_002386347
RefSeq Status:
Type: NON-CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247801,648,374 - 1,685,280 (-)NCBI
RefSeq Acc Id: XR_002386348
RefSeq Status:
Type: NON-CODING
Position:
Molerat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247801,646,194 - 1,685,280 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_004855356   ⟸   XM_004855299
- Peptide Label: isoform X1
- UniProtKB: G5C638 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092427   ⟸   XM_021236768
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021092425   ⟸   XM_021236766
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004855357   ⟸   XM_004855300
- Peptide Label: isoform X1
- UniProtKB: G5C638 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092426   ⟸   XM_021236767
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010791 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSHGLP00000015067 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000015221 ENTREZGENE, UniProtKB/TrEMBL
InterPro Plipid/glycerol_acylTrfase UniProtKB/TrEMBL
KEGG Report hgl:101717224 UniProtKB/TrEMBL
NCBI Gene Gpat4 ENTREZGENE
Pfam Acyltransferase UniProtKB/TrEMBL
SMART PlsC UniProtKB/TrEMBL
UniProt G5C638 ENTREZGENE, UniProtKB/TrEMBL