Podxl2 (podocalyxin like 2) - Rat Genome Database

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Gene: Podxl2 (podocalyxin like 2) Heterocephalus glaber
Analyze
Symbol: Podxl2
Name: podocalyxin like 2
RGD ID: 18929574
Description: INVOLVED IN leukocyte tethering or rolling (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); genetic disease (ortholog); immunodeficiency 21 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: podocalyxin-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462497443,335 - 76,837 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462497443,578 - 76,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
Podxl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462497443,335 - 76,837 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462497443,578 - 76,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PODXL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383127,629,185 - 127,672,802 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3127,629,185 - 127,672,802 (+)EnsemblGRCh38hg38GRCh38
GRCh373127,348,028 - 127,391,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363128,830,729 - 128,874,342 (+)NCBINCBI36Build 36hg18NCBI36
Build 343128,830,757 - 128,874,343NCBI
Celera3125,774,516 - 125,818,509 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3124,737,918 - 124,772,415 (+)NCBIHuRef
CHM1_13127,311,335 - 127,354,973 (+)NCBICHM1_1
T2T-CHM13v2.03130,363,847 - 130,407,463 (+)NCBIT2T-CHM13v2.0
Podxl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,819,539 - 88,852,063 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl688,819,540 - 88,852,026 (-)EnsemblGRCm39 Ensembl
GRCm38688,842,557 - 88,875,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,842,558 - 88,875,044 (-)EnsemblGRCm38mm10GRCm38
MGSCv37688,792,552 - 88,824,038 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36688,808,206 - 88,839,685 (-)NCBIMGSCv36mm8
Celera690,780,757 - 90,812,060 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.6NCBI
Podxl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84122,863,476 - 122,895,318 (-)NCBIGRCr8
mRatBN7.24121,306,224 - 121,338,070 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4121,306,224 - 121,338,112 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4126,777,877 - 126,809,657 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04122,552,628 - 122,584,406 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04121,176,866 - 121,208,646 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04120,785,494 - 120,817,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4120,785,495 - 120,817,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04186,026,103 - 186,057,942 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,937,318 - 122,969,158 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14123,181,806 - 123,213,244 (-)NCBI
Celera4110,259,432 - 110,291,285 (-)NCBICelera
Cytogenetic Map4q34NCBI
Podxl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542915,968,877 - 15,995,617 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542915,968,877 - 15,995,617 (-)NCBIChiLan1.0ChiLan1.0
PODXL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22125,552,311 - 125,595,910 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13125,557,033 - 125,600,632 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03124,673,860 - 124,717,469 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13131,981,894 - 132,023,746 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3131,981,894 - 132,023,747 (+)Ensemblpanpan1.1panPan2
PODXL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1201,716,672 - 1,752,872 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl201,716,666 - 1,760,035 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha201,753,643 - 1,790,583 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0201,737,533 - 1,774,473 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl201,737,518 - 1,774,460 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1201,458,873 - 1,495,811 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0201,786,551 - 1,823,197 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0201,744,755 - 1,783,027 (+)NCBIUU_Cfam_GSD_1.0
Podxl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,694,530 - 20,703,780 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936798736,003 - 745,634 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PODXL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1372,579,311 - 72,622,950 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11372,579,310 - 72,630,179 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21380,097,261 - 80,140,920 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PODXL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12253,370,668 - 53,405,832 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2253,371,004 - 53,403,512 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041112,941,079 - 112,984,367 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000000235   ⟹   ENSHGLP00000000205
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462497443,335 - 76,837 (+)Ensembl
RefSeq Acc Id: XM_004875270   ⟹   XP_004875327
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462497443,578 - 76,918 (+)NCBI
RefSeq Acc Id: XM_021252500   ⟹   XP_021108159
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462497443,578 - 76,918 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004875327 (Get FASTA)   NCBI Sequence Viewer  
  XP_021108159 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000205
Reference Protein Sequences
RefSeq Acc Id: XP_021108159   ⟸   XM_021252500
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004875327   ⟸   XM_004875270
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000000205   ⟸   ENSHGLT00000000235


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000212 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000235 ENTREZGENE
NCBI Gene Podxl2 ENTREZGENE