Sgsm1 (small G protein signaling modulator 1) - Rat Genome Database

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Gene: Sgsm1 (small G protein signaling modulator 1) Heterocephalus glaber
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Symbol: Sgsm1
Name: small G protein signaling modulator 1
RGD ID: 18929280
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247472,114,562 - 2,206,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247472,113,259 - 2,205,718 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sgsm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247472,114,562 - 2,206,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247472,113,259 - 2,205,718 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SGSM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382224,806,211 - 24,927,578 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2224,806,169 - 24,927,578 (+)EnsemblGRCh38hg38GRCh38
GRCh372225,202,178 - 25,323,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362223,532,136 - 23,652,813 (+)NCBINCBI36Build 36hg18NCBI36
Celera229,006,548 - 9,127,191 (+)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef228,151,216 - 8,271,579 (+)NCBIHuRef
CHM1_12225,161,077 - 25,281,547 (+)NCBICHM1_1
T2T-CHM13v2.02225,267,600 - 25,389,136 (+)NCBIT2T-CHM13v2.0
Sgsm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,391,086 - 113,458,654 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,391,086 - 113,458,652 (-)EnsemblGRCm39 Ensembl
GRCm385113,243,220 - 113,310,788 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,243,220 - 113,310,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv375113,672,240 - 113,739,806 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365113,483,532 - 113,551,022 (-)NCBIMGSCv36mm8
Celera5110,363,560 - 110,432,092 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.45NCBI
Sgsm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,969,578 - 49,049,110 (+)NCBIGRCr8
mRatBN7.21243,320,500 - 43,386,469 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,321,256 - 43,386,457 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,487,875 - 44,552,684 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,100,490 - 45,165,694 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,161,013 - 44,226,220 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01249,329,093 - 49,395,078 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1249,328,977 - 49,395,125 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,102,730 - 51,169,362 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41244,329,807 - 44,395,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11244,211,959 - 44,256,802 (+)NCBI
Celera1244,917,920 - 44,983,077 (+)NCBICelera
Cytogenetic Map12q16NCBI
Sgsm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955455260,410 - 343,253 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955455258,472 - 343,079 (-)NCBIChiLan1.0ChiLan1.0
SGSM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22334,705,565 - 34,826,547 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12237,403,798 - 37,525,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0225,761,495 - 5,882,410 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12223,429,802 - 23,549,021 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2223,429,702 - 23,546,446 (+)Ensemblpanpan1.1panPan2
SGSM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12618,977,100 - 19,057,190 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2618,976,361 - 19,075,458 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,843,281 - 18,923,350 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02619,342,265 - 19,422,695 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2619,342,236 - 19,422,695 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12619,048,218 - 19,126,544 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02619,312,628 - 19,393,906 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02619,381,741 - 19,463,028 (+)NCBIUU_Cfam_GSD_1.0
Sgsm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118115,728,506 - 115,807,723 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493665765,586 - 142,206 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936657109,232 - 142,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGSM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1442,882,154 - 42,974,741 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11442,882,101 - 42,974,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21445,613,319 - 45,705,958 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SGSM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1197,906,444 - 8,024,484 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl197,906,657 - 8,024,488 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045118,097,305 - 118,215,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000016298   ⟹   ENSHGLP00000016129
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247472,114,562 - 2,206,060 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000016299   ⟹   ENSHGLP00000016130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247472,140,622 - 2,205,482 (-)Ensembl
RefSeq Acc Id: XM_004843337   ⟹   XP_004843394
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247472,113,259 - 2,205,717 (-)NCBI
RefSeq Acc Id: XM_004843339   ⟹   XP_004843396
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247472,113,259 - 2,205,709 (-)NCBI
RefSeq Acc Id: XM_004843340   ⟹   XP_004843397
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247472,113,259 - 2,174,884 (-)NCBI
RefSeq Acc Id: XM_013071977   ⟹   XP_012927431
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247472,113,259 - 2,205,709 (-)NCBI
RefSeq Acc Id: XM_021257140   ⟹   XP_021112799
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247472,113,259 - 2,182,421 (-)NCBI
RefSeq Acc Id: XM_021257141   ⟹   XP_021112800
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247472,130,448 - 2,205,718 (-)NCBI
RefSeq Acc Id: XP_004843394   ⟸   XM_004843337
- Peptide Label: isoform X4
- UniProtKB: G5BGN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927431   ⟸   XM_013071977
- Peptide Label: isoform X1
- UniProtKB: G5BGN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843396   ⟸   XM_004843339
- Peptide Label: isoform X2
- UniProtKB: G5BGN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112799   ⟸   XM_021257140
- Peptide Label: isoform X2
- UniProtKB: G5BGN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843397   ⟸   XM_004843340
- Peptide Label: isoform X2
- UniProtKB: G5BGN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112800   ⟸   XM_021257141
- Peptide Label: isoform X3
- UniProtKB: G5BGN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016130   ⟸   ENSHGLT00000016299
RefSeq Acc Id: ENSHGLP00000016129   ⟸   ENSHGLT00000016298


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011538 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016298 ENTREZGENE
Gene3D-CATH 1.20.58.900 UniProtKB/TrEMBL
  2.30.29.230 UniProtKB/TrEMBL
  putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GAP-TBC_dom UniProtKB/TrEMBL
  Rab-GAP_TBC_sf UniProtKB/TrEMBL
  Run_dom UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_SGSM1 UniProtKB/TrEMBL
  SGSM1/2 UniProtKB/TrEMBL
  SGSM1/2_RBD UniProtKB/TrEMBL
NCBI Gene Sgsm1 ENTREZGENE
PANTHER UNCHARACTERIZED UniProtKB/TrEMBL
  UPF0606 PROTEIN KIAA1549 UniProtKB/TrEMBL
Pfam PH_RBD UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PROSITE RUN UniProtKB/TrEMBL
  TBC_RABGAP UniProtKB/TrEMBL
SMART RUN UniProtKB/TrEMBL
  TBC UniProtKB/TrEMBL
Superfamily-SCOP RUN domain-like UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p UniProtKB/TrEMBL
UniProt G5BGN5 ENTREZGENE, UniProtKB/TrEMBL