Ubl4a (ubiquitin like 4A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ubl4a (ubiquitin like 4A) Heterocephalus glaber
Analyze
Symbol: Ubl4a
Name: ubiquitin like 4A
RGD ID: 18929129
Description: ENCODES a protein that exhibits protein-folding chaperone binding (inferred); INVOLVED IN regulation of protein stability (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Barth syndrome (ortholog); FOUND IN BAT3 complex (ortholog); cytoplasm (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-like protein 4A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946955,993 - 958,849 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
BAT3 complex  (IEA,ISO)
cytoplasm  (ISO)
cytosol  (IEA)
membrane  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ubl4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946955,993 - 958,849 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UBL4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,483,717 - 154,486,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,483,717 - 154,486,615 (-)EnsemblGRCh38hg38GRCh38
GRCh37X153,712,056 - 153,714,954 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,365,250 - 153,368,126 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X153,275,761 - 153,278,636NCBI
CeleraX153,873,107 - 153,875,983 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,288,568 - 142,290,380 (-)NCBIHuRef
CHM1_1X153,623,701 - 153,626,577 (-)NCBICHM1_1
T2T-CHM13v2.0X152,720,226 - 152,723,124 (-)NCBIT2T-CHM13v2.0
Ubl4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,409,324 - 73,412,154 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,409,324 - 73,416,824 (-)EnsemblGRCm39 Ensembl
GRCm38X74,365,718 - 74,368,548 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,365,718 - 74,373,218 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,612,740 - 71,613,866 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,620,121 - 70,621,247 (-)NCBIMGSCv36mm8
CeleraX65,621,216 - 65,622,342 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX38.0NCBI
Ubl4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,302,528 - 157,305,380 (-)NCBIGRCr8
mRatBN7.2X152,151,242 - 152,154,094 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,151,460 - 152,154,069 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,292,367 - 154,295,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,855,174 - 157,858,026 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,527,400 - 155,530,252 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,340,919 - 156,343,771 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,340,925 - 156,343,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,081,056 - 152,083,908 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,239,300 - 160,242,152 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1135,742,562 - 135,745,414 (+)NCBICelera
Cytogenetic MapXq37NCBI
Ubl4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580997,204 - 1,001,368 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580998,953 - 1,001,368 (-)NCBIChiLan1.0ChiLan1.0
UBL4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,458,117 - 154,461,095 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,461,722 - 154,464,672 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,925,494 - 143,928,444 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,796,889 - 153,799,214 (-)NCBIpanpan1.1PanPan1.1panPan2
UBL4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,195,500 - 122,196,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,195,502 - 122,196,577 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,337,154 - 125,338,233 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,335,829 - 125,338,220 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,106,157 - 121,107,231 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,621,230 - 123,622,309 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,383,001 - 123,384,080 (-)NCBIUU_Cfam_GSD_1.0
Ubl4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,500,690 - 119,503,571 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,238,462 - 1,241,318 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,238,459 - 1,241,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC10A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX125,007,122 - 125,013,980 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X125,007,121 - 125,009,657 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,575,797 - 143,578,331 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBL4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,733,219 - 128,736,150 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX128,732,876 - 128,736,077 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606566,722,027 - 66,724,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005115   ⟹   ENSHGLP00000005049
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624946955,993 - 958,849 (-)Ensembl
RefSeq Acc Id: XM_004875011   ⟹   XP_004875068
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XM_004875012   ⟹   XP_004875069
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XM_004875013   ⟹   XP_004875070
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XM_004875014   ⟹   XP_004875071
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XM_004875015   ⟹   XP_004875072
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XR_001182928
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XR_002392159
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XR_002392161
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XR_002392162
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XR_002392163
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XR_002392164
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
RefSeq Acc Id: XR_002392165
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624946955,993 - 958,424 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004875068 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875069 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875070 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875071 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875072 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005049
GenBank Protein JAO00329 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004875068   ⟸   XM_004875011
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004875071   ⟸   XM_004875014
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004875070   ⟸   XM_004875013
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004875069   ⟸   XM_004875012
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004875072   ⟸   XM_004875015
- Peptide Label: isoform X4
- UniProtKB: A0A0P6JD64 (UniProtKB/TrEMBL),   G5BFL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005049   ⟸   ENSHGLT00000005115


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003702 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005115 ENTREZGENE
InterPro Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
  Ubl4_C_TUGS UniProtKB/TrEMBL
  Ubl_UBL4A-like UniProtKB/TrEMBL
NCBI Gene Ubl4a ENTREZGENE
PANTHER UBIQUITIN-LIKE PROTEIN 4A UniProtKB/TrEMBL
  UBIQUITIN-LIKE PROTEIN 4A UniProtKB/TrEMBL
Pfam Tugs UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PRINTS UBIQUITIN UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A0P6JD64 ENTREZGENE, UniProtKB/TrEMBL
  G5BFL3 ENTREZGENE, UniProtKB/TrEMBL