Tssk1b (testis specific serine kinase 1B) - Rat Genome Database

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Gene: Tssk1b (testis specific serine kinase 1B) Heterocephalus glaber
Analyze
Symbol: Tssk1b
Name: testis specific serine kinase 1B
RGD ID: 18929051
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN spermatid development (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis-specific serine/threonine-protein kinase 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477110,522,506 - 10,523,615 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477110,522,357 - 10,523,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
motile cilium  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tssk1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477110,522,506 - 10,523,615 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477110,522,357 - 10,523,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TSSK1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385113,432,553 - 113,434,989 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5113,432,553 - 113,434,989 (-)EnsemblGRCh38hg38GRCh38
GRCh375112,768,250 - 112,770,686 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365112,796,570 - 112,798,565 (-)NCBINCBI36Build 36hg18NCBI36
Celera5108,716,065 - 108,718,542 (-)NCBICelera
Cytogenetic Map5q22.2NCBI
HuRef5107,951,168 - 107,953,645 (-)NCBIHuRef
CHM1_15112,201,716 - 112,204,193 (-)NCBICHM1_1
T2T-CHM13v2.05113,945,250 - 113,947,686 (-)NCBIT2T-CHM13v2.0
Tssk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,712,067 - 17,713,517 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,712,087 - 17,715,786 (+)EnsemblGRCm39 Ensembl
GRCm381617,894,203 - 17,895,653 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,894,223 - 17,897,922 (+)EnsemblGRCm38mm10GRCm38
MGSCv371617,894,296 - 17,895,746 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,807,857 - 17,809,216 (+)NCBIMGSCv36mm8
Celera1618,467,268 - 18,468,718 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.09NCBI
Tssk1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,595,216 - 96,596,639 (-)NCBIGRCr8
mRatBN7.21183,090,930 - 83,092,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,086,578 - 83,093,011 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,819,546 - 91,820,969 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,480,680 - 84,482,103 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,534,295 - 83,535,718 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,239,410 - 87,240,833 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,239,412 - 87,240,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01190,330,973 - 90,332,396 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,079,063 - 85,080,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,119,659 - 85,121,083 (-)NCBI
Celera1181,866,941 - 81,868,364 (-)NCBICelera
Cytogenetic Map11q23NCBI
TSSK1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24108,684,587 - 108,695,058 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15106,840,770 - 106,848,713 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05108,790,115 - 108,794,426 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15114,592,477 - 114,594,528 (-)NCBIpanpan1.1PanPan1.1panPan2
TSSK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,050,195 - 30,051,599 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,009,919 - 30,011,391 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02631,457,133 - 31,458,602 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,457,334 - 31,458,443 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,505,288 - 29,506,757 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,129,731 - 29,131,200 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,217,878 - 30,219,347 (-)NCBIUU_Cfam_GSD_1.0
Tssk1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118139,629,594 - 139,633,538 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366193,123,157 - 3,124,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366193,121,338 - 3,124,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSSK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,937,885 - 50,938,979 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,937,885 - 50,938,979 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,444,011 - 54,445,105 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSSK1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12316,721,966 - 16,724,314 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2316,722,742 - 16,723,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603461,709,688 - 61,712,498 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004853455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01050481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000029458   ⟹   ENSHGLP00000028843
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477110,522,506 - 10,523,615 (-)Ensembl
RefSeq Acc Id: XM_004853455   ⟹   XP_004853512
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477110,522,357 - 10,523,770 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004853512 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028843
Reference Protein Sequences
RefSeq Acc Id: XP_004853512   ⟸   XM_004853455
- UniProtKB: G5BGT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000028843   ⟸   ENSHGLT00000029458


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000021248 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000029458 ENTREZGENE
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Tssk1b ENTREZGENE
PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE UniProtKB/TrEMBL
  TESTIS-SPECIFIC SERINE_THREONINE-PROTEIN KINASE 1 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt G5BGT7 ENTREZGENE, UniProtKB/TrEMBL