Mixl1 (Mix paired-like homeobox) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Mixl1 (Mix paired-like homeobox) Heterocephalus glaber
Analyze
Symbol: Mixl1
Name: Mix paired-like homeobox
RGD ID: 18928630
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN cell migration involved in gastrulation (ortholog); digestive tract development (ortholog); endoderm development (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein MIXL1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807322,723 - 326,149 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624807322,723 - 325,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mixl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807322,723 - 326,149 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624807322,723 - 325,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MIXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,223,664 - 226,227,060 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,223,618 - 226,227,060 (+)EnsemblGRCh38hg38GRCh38
GRCh371226,411,365 - 226,414,761 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,478,006 - 224,480,136 (+)NCBINCBI36Build 36hg18NCBI36
Build 341222,718,117 - 222,720,248NCBI
Celera1199,602,144 - 199,604,274 (+)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,928,386 - 196,930,516 (+)NCBIHuRef
CHM1_11227,684,126 - 227,686,256 (+)NCBICHM1_1
T2T-CHM13v2.01225,411,532 - 225,414,928 (+)NCBIT2T-CHM13v2.0
Mixl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,520,608 - 180,524,599 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,520,608 - 180,524,599 (-)EnsemblGRCm39 Ensembl
GRCm381180,693,043 - 180,697,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,693,043 - 180,697,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,623,174 - 182,627,165 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,529,718 - 182,533,709 (-)NCBIMGSCv36mm8
Celera1187,754,505 - 187,758,493 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
Mixl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,953,907 - 94,957,938 (-)NCBIGRCr8
mRatBN7.21392,422,031 - 92,426,065 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,422,031 - 92,426,065 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1394,927,431 - 94,931,466 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,327,378 - 96,331,405 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,502,070 - 93,506,101 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01397,278,258 - 97,282,299 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,973,041 - 98,975,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1397,278,258 - 97,282,299 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013103,973,473 - 103,977,504 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,427,597 - 96,431,628 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11396,618,156 - 96,620,542 (-)NCBI
Celera1391,967,784 - 91,971,815 (-)NCBICelera
Cytogenetic Map13q26NCBI
Mixl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955489418,650 - 422,428 (+)NCBIChiLan1.0ChiLan1.0
MIXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,312,503 - 23,316,315 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,260,972 - 23,264,778 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,682,488 - 201,686,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,671,344 - 206,679,904 (+)NCBIpanpan1.1PanPan1.1panPan2
MIXL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,651,481 - 38,652,560 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,132,918 - 38,135,788 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,485,283 - 38,487,650 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1738,323,946 - 38,326,305 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,330,845 - 38,333,218 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,602,254 - 38,605,581 (-)NCBIUU_Cfam_GSD_1.0
Mixl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,756,331 - 51,762,377 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,984,907 - 2,987,893 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,984,900 - 2,989,494 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MIXL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1014,102,290 - 14,105,983 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11014,102,273 - 14,105,544 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,667,360 - 15,670,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MIXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,542,923 - 3,546,561 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,544,169 - 3,546,305 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,543,098 - 3,548,489 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004862270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01073644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000008519   ⟹   ENSHGLP00000008430
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624807322,723 - 326,149 (+)Ensembl
RefSeq Acc Id: XM_004862270   ⟹   XP_004862327
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624807322,723 - 325,089 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004862327 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008430
Reference Protein Sequences
RefSeq Acc Id: XP_004862327   ⟸   XM_004862270
RefSeq Acc Id: ENSHGLP00000008430   ⟸   ENSHGLT00000008519


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006093 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008519 ENTREZGENE
NCBI Gene Mixl1 ENTREZGENE