Eml6 (EMAP like 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Eml6 (EMAP like 6) Heterocephalus glaber
Analyze
Symbol: Eml6
Name: EMAP like 6
RGD ID: 18928618
Description: ENCODES a protein that exhibits microtubule binding (inferred); ASSOCIATED WITH genetic disease (ortholog); keratoconus (ortholog); FOUND IN cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: echinoderm microtubule associated protein like 6; echinoderm microtubule-associated protein-like 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248336,585,993 - 6,895,655 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248336,584,173 - 6,895,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoskeleton  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Eml6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248336,585,993 - 6,895,655 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248336,584,173 - 6,895,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EML6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38254,723,552 - 54,972,025 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl254,723,499 - 54,972,025 (+)EnsemblGRCh38hg38GRCh38
GRCh37254,950,799 - 55,199,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36254,805,659 - 55,051,435 (+)NCBINCBI36Build 36hg18NCBI36
Celera254,792,667 - 55,039,644 (+)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef254,684,764 - 54,934,090 (+)NCBIHuRef
CHM1_1254,882,277 - 55,129,212 (+)NCBICHM1_1
T2T-CHM13v2.0254,717,662 - 54,969,215 (+)NCBIT2T-CHM13v2.0
Eml6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,693,044 - 29,976,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,693,048 - 29,976,033 (-)EnsemblGRCm39 Ensembl
GRCm381129,743,044 - 30,026,045 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,743,048 - 30,026,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv371129,643,051 - 29,926,033 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361129,644,134 - 29,664,233 (-)NCBIMGSCv36mm8
Celera1132,109,179 - 32,397,605 (-)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.83NCBI
Eml6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,651,893 - 108,006,792 (-)NCBIGRCr8
mRatBN7.214103,471,537 - 103,806,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14103,476,372 - 103,805,849 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.014114,174,282 - 114,484,663 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14114,176,051 - 114,484,127 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014113,839,256 - 114,152,165 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414110,774,217 - 110,979,159 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera14102,372,026 - 102,679,764 (-)NCBICelera
Cytogenetic Map14q22NCBI
Eml6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542428,127,825 - 28,462,003 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542428,125,287 - 28,461,646 (-)NCBIChiLan1.0ChiLan1.0
EML6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21271,353,494 - 71,616,372 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A71,357,903 - 71,619,818 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A54,868,502 - 55,129,398 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,016,164 - 56,271,047 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,016,187 - 56,269,129 (+)Ensemblpanpan1.1panPan2
EML6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11055,612,328 - 55,881,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1055,610,805 - 55,880,485 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1055,564,756 - 55,839,380 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01056,612,085 - 56,886,593 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1056,612,051 - 56,885,445 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11056,301,785 - 56,588,201 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01056,592,332 - 56,866,639 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01056,882,881 - 57,157,581 (+)NCBIUU_Cfam_GSD_1.0
Eml6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629227,164,018 - 27,418,167 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364911,253,815 - 1,403,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364911,153,505 - 1,407,811 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EML6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl386,252,277 - 86,536,926 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1386,251,487 - 86,537,065 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2391,066,655 - 91,260,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EML6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11451,955,409 - 52,210,868 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,957,866 - 52,115,283 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604559,511,529 - 59,766,636 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004867282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021246313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01084742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01084756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000015413   ⟹   ENSHGLP00000015258
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248336,585,993 - 6,895,655 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000015414   ⟹   ENSHGLP00000015259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248336,586,891 - 6,784,243 (-)Ensembl
RefSeq Acc Id: XM_004867282   ⟹   XP_004867339
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248336,584,173 - 6,895,938 (-)NCBI
RefSeq Acc Id: XM_021246309   ⟹   XP_021101968
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248336,584,173 - 6,895,939 (-)NCBI
RefSeq Acc Id: XM_021246310   ⟹   XP_021101969
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248336,584,173 - 6,895,939 (-)NCBI
RefSeq Acc Id: XM_021246311   ⟹   XP_021101970
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248336,584,173 - 6,895,939 (-)NCBI
RefSeq Acc Id: XM_021246312   ⟹   XP_021101971
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248336,584,173 - 6,895,939 (-)NCBI
RefSeq Acc Id: XM_021246313   ⟹   XP_021101972
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248336,584,173 - 6,895,939 (-)NCBI
RefSeq Acc Id: XP_021101972   ⟸   XM_021246313
- Peptide Label: isoform X6
- UniProtKB: G5B8W1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101971   ⟸   XM_021246312
- Peptide Label: isoform X4
- UniProtKB: G5B8W1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101969   ⟸   XM_021246310
- Peptide Label: isoform X2
- UniProtKB: G5B8W1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101970   ⟸   XM_021246311
- Peptide Label: isoform X3
- UniProtKB: G5B8W1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101968   ⟸   XM_021246309
- Peptide Label: isoform X1
- UniProtKB: G5B8W1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004867339   ⟸   XM_004867282
- Peptide Label: isoform X5
- UniProtKB: G5B8W1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015259   ⟸   ENSHGLT00000015414
RefSeq Acc Id: ENSHGLP00000015258   ⟸   ENSHGLT00000015413


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010907 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015413 ENTREZGENE
Gene3D-CATH YVTN repeat-like/Quinoprotein amine dehydrogenase UniProtKB/TrEMBL
InterPro Apc4-like_WD40_dom UniProtKB/TrEMBL
  HELP UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Eml6 ENTREZGENE
PANTHER ECHINODERM MICROTUBULE-ASSOCIATED PROTEIN-LIKE 6 UniProtKB/TrEMBL
  WD-40 REPEAT PROTEIN UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
  HELP UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP Quinoprotein alcohol dehydrogenase-like UniProtKB/TrEMBL
  WD40 repeat-like UniProtKB/TrEMBL
UniProt G5B8W1 ENTREZGENE, UniProtKB/TrEMBL