Calhm6 (calcium homeostasis modulator family member 6) - Rat Genome Database

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Gene: Calhm6 (calcium homeostasis modulator family member 6) Heterocephalus glaber
Analyze
Symbol: Calhm6
Name: calcium homeostasis modulator family member 6
RGD ID: 18928584
Description: ENCODES a protein that exhibits voltage-gated channel activity (ortholog); INVOLVED IN regulation of natural killer cell cytokine production (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); epilepsy (ortholog); FOUND IN immunological synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam26f; family with sequence similarity 26 member F; protein FAM26F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248561,986,546 - 1,992,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248561,989,913 - 1,992,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Calhm6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248561,986,546 - 1,992,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248561,989,913 - 1,992,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CALHM6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,461,375 - 116,463,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,461,370 - 116,463,771 (+)EnsemblGRCh38hg38GRCh38
GRCh376116,782,538 - 116,784,934 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366116,889,249 - 116,891,627 (+)NCBINCBI36Build 36hg18NCBI36
Celera6117,525,623 - 117,528,003 (+)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,362,389 - 114,364,792 (+)NCBIHuRef
CHM1_16117,046,176 - 117,048,577 (+)NCBICHM1_1
T2T-CHM13v2.06117,645,096 - 117,647,492 (+)NCBIT2T-CHM13v2.0
Calhm6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391034,002,063 - 34,003,968 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1034,002,063 - 34,003,980 (-)EnsemblGRCm39 Ensembl
GRCm381034,126,067 - 34,127,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1034,126,067 - 34,127,984 (-)EnsemblGRCm38mm10GRCm38
MGSCv371033,845,873 - 33,847,778 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361033,815,485 - 33,817,388 (-)NCBIMGSCv36mm8
Celera1035,035,780 - 35,037,686 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1018.85NCBI
Calhm6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82026,638,721 - 26,640,466 (-)NCBIGRCr8
mRatBN7.22026,095,591 - 26,097,336 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2026,095,592 - 26,097,278 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2027,097,854 - 27,099,524 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02026,484,199 - 26,485,869 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02027,232,378 - 27,234,048 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,681,138 - 27,683,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,681,036 - 27,682,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,505,895 - 29,507,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,668,509 - 37,670,179 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12037,689,664 - 37,691,334 (+)NCBI
Celera2027,549,278 - 27,550,948 (-)NCBICelera
Cytogenetic Map20q11NCBI
Calhm6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955526319,920 - 321,985 (-)NCBIChiLan1.0ChiLan1.0
CALHM6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25136,468,847 - 136,471,457 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16134,361,834 - 134,364,454 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06114,263,062 - 114,265,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16118,409,641 - 118,411,651 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6118,409,813 - 118,411,574 (+)Ensemblpanpan1.1panPan2
CALHM6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,894,565 - 56,896,665 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,894,631 - 56,896,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,689,611 - 57,691,794 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,076,273 - 57,078,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,076,422 - 57,078,292 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,970,750 - 56,972,941 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,818,915 - 56,821,109 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,447,758 - 57,449,845 (+)NCBIUU_Cfam_GSD_1.0
Calhm6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946107,294,056 - 107,295,902 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368241,019,154 - 1,020,961 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368241,019,124 - 1,020,871 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALHM6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl182,085,714 - 82,087,889 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1182,085,781 - 82,087,897 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2192,328,297 - 92,329,976 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALHM6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11357,352,225 - 57,354,127 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1357,349,681 - 57,354,318 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604029,680,433 - 29,682,660 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004869069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01091961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000003790   ⟹   ENSHGLP00000003735
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248561,986,546 - 1,992,578 (-)Ensembl
RefSeq Acc Id: XM_004869069   ⟹   XP_004869126
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248561,989,913 - 1,992,496 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004869126 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003735
RefSeq Acc Id: XP_004869126   ⟸   XM_004869069
- UniProtKB: G5C161 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003735   ⟸   ENSHGLT00000003790


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002748 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003790 ENTREZGENE
InterPro CALHM UniProtKB/TrEMBL
NCBI Gene Calhm6 ENTREZGENE
PANTHER CALCIUM HOMEOSTASIS MODULATOR PROTEIN UniProtKB/TrEMBL
  CALCIUM HOMEOSTASIS MODULATOR PROTEIN 6 UniProtKB/TrEMBL
Pfam Ca_hom_mod UniProtKB/TrEMBL
UniProt G5C161 ENTREZGENE, UniProtKB/TrEMBL