Slc38a11 (solute carrier family 38 member 11) - Rat Genome Database

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Gene: Slc38a11 (solute carrier family 38 member 11) Heterocephalus glaber
Analyze
Symbol: Slc38a11
Name: solute carrier family 38 member 11
RGD ID: 18928409
Description: ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative sodium-coupled neutral amino acid transporter 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624732453,797 - 507,346 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624732453,714 - 507,484 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc38a11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624732453,797 - 507,346 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624732453,714 - 507,484 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC38A11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382164,894,354 - 164,955,525 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2164,894,354 - 164,955,525 (-)EnsemblGRCh38hg38GRCh38
GRCh372165,750,864 - 165,812,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362165,463,058 - 165,520,281 (-)NCBINCBI36Build 36hg18NCBI36
Celera2159,365,443 - 159,422,633 (-)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2157,637,180 - 157,694,472 (-)NCBIHuRef
CHM1_12165,760,572 - 165,817,891 (-)NCBICHM1_1
T2T-CHM13v2.02165,351,705 - 165,412,860 (-)NCBIT2T-CHM13v2.0
Slc38a11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,144,007 - 65,194,606 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,146,774 - 65,194,378 (-)EnsemblGRCm39 Ensembl
GRCm38265,313,663 - 65,364,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl265,316,430 - 65,364,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv37265,154,690 - 65,202,083 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,153,751 - 65,164,762 (-)NCBIMGSCv36mm8
Celera266,992,822 - 67,040,789 (-)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.47NCBI
Slc38a11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8370,374,550 - 70,442,313 (-)NCBIGRCr8
mRatBN7.2349,987,119 - 50,033,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl349,987,124 - 50,033,615 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx353,331,110 - 53,377,650 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0361,914,727 - 61,961,265 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0359,698,286 - 59,744,736 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0351,370,388 - 51,416,873 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl351,371,923 - 51,416,646 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,005,040 - 58,053,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4347,186,809 - 47,306,376 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,126,542 - 47,202,857 (-)NCBI
Celera349,589,943 - 49,636,526 (-)NCBICelera
Cytogenetic Map3q21NCBI
Slc38a11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554499,126,231 - 9,176,683 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554499,126,231 - 9,176,698 (+)NCBIChiLan1.0ChiLan1.0
SLC38A11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21367,555,461 - 67,616,909 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B67,574,496 - 67,631,790 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B52,171,529 - 52,230,950 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B169,531,680 - 169,591,056 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B169,531,680 - 169,590,857 (-)Ensemblpanpan1.1panPan2
SLC38A11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13610,118,546 - 10,174,224 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3610,119,675 - 10,174,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3610,262,317 - 10,319,154 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03610,250,832 - 10,307,803 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3610,251,905 - 10,307,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13610,324,130 - 10,381,002 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03610,303,630 - 10,360,857 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03610,417,486 - 10,474,678 (-)NCBIUU_Cfam_GSD_1.0
Slc38a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303127,260,682 - 127,312,101 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646914,305,820 - 14,355,724 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646914,306,331 - 14,355,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1571,559,986 - 71,650,490 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11571,561,270 - 71,613,425 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21579,859,349 - 79,877,895 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11050,369,778 - 50,428,665 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1050,368,431 - 50,428,848 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040149,081,577 - 149,137,609 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012828   ⟹   ENSHGLP00000012691
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624732453,797 - 507,346 (+)Ensembl
RefSeq Acc Id: XM_013075822   ⟹   XP_012931276
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624732453,714 - 507,484 (+)NCBI
RefSeq Acc Id: XM_021265452   ⟹   XP_021121111
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624732453,714 - 507,484 (+)NCBI
RefSeq Acc Id: XM_021265455   ⟹   XP_021121114
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624732478,214 - 507,484 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012931276 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121111 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012691
Reference Protein Sequences
RefSeq Acc Id: XP_012931276   ⟸   XM_013075822
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021121111   ⟸   XM_021265452
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021121114   ⟸   XM_021265455
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000012691   ⟸   ENSHGLT00000012828


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009075 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012828 ENTREZGENE
NCBI Gene Slc38a11 ENTREZGENE