Dach1 (dachshund family transcription factor 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Dach1 (dachshund family transcription factor 1) Heterocephalus glaber
Analyze
Symbol: Dach1
Name: dachshund family transcription factor 1
RGD ID: 18928378
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN development of primary female sexual characteristics (ortholog); epithelial cell proliferation (ortholog); negative regulation of cell migration (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dachshund homolog 1; Dachshund-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475128,703,108 - 29,080,750 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475128,702,797 - 29,080,751 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Dach1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475128,703,108 - 29,080,750 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475128,702,797 - 29,080,751 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DACH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381371,437,966 - 71,867,204 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1371,437,966 - 71,867,204 (-)EnsemblGRCh38hg38GRCh38
GRCh371372,012,098 - 72,441,342 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361370,910,099 - 71,339,331 (-)NCBINCBI36Build 36hg18NCBI36
Celera1352,914,100 - 53,343,311 (-)NCBICelera
Cytogenetic Map13q21.33NCBI
HuRef1352,714,019 - 53,142,879 (-)NCBIHuRef
CHM1_11371,980,085 - 72,408,806 (-)NCBICHM1_1
T2T-CHM13v2.01370,663,152 - 71,092,075 (-)NCBIT2T-CHM13v2.0
Dach1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391498,024,294 - 98,407,208 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1498,024,289 - 98,407,201 (-)EnsemblGRCm39 Ensembl
GRCm381497,786,846 - 98,169,765 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1497,786,853 - 98,169,765 (-)EnsemblGRCm38mm10GRCm38
MGSCv371498,186,066 - 98,568,762 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361496,669,981 - 97,052,677 (-)NCBIMGSCv36mm8
Celera1496,458,913 - 96,841,080 (-)NCBICelera
Cytogenetic Map14E2.1NCBI
cM Map1448.25NCBI
Dach1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81580,936,063 - 81,317,746 (-)NCBIGRCr8
mRatBN7.21574,528,122 - 74,909,811 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1574,529,208 - 74,909,922 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01582,095,003 - 82,482,272 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1582,099,159 - 82,482,009 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01585,630,327 - 86,015,440 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41581,193,149 - 81,573,098 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1573,782,806 - 74,166,266 (-)NCBICelera
Cytogenetic Map15q21NCBI
Dach1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540434,740,026 - 35,137,490 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540434,739,780 - 35,118,037 (+)NCBIChiLan1.0ChiLan1.0
DACH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21473,018,384 - 73,449,376 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11371,608,707 - 72,040,553 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01352,666,569 - 53,098,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11371,445,338 - 71,872,200 (-)NCBIpanpan1.1PanPan1.1panPan2
DACH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12225,690,700 - 25,934,449 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2225,726,597 - 25,934,550 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2225,548,120 - 25,971,191 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02226,032,633 - 26,451,423 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2226,035,267 - 26,451,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12225,657,470 - 26,080,260 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02225,729,296 - 26,152,543 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02225,802,120 - 26,225,501 (-)NCBIUU_Cfam_GSD_1.0
Dach1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945133,481,740 - 133,870,853 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365119,061,676 - 9,253,486 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365118,899,245 - 9,253,024 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DACH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1143,764,271 - 44,187,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11143,765,386 - 44,187,766 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21148,207,856 - 48,598,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DACH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1350,591,136 - 51,020,042 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660466,672,701 - 7,107,250 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004845276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01032413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01032434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH168915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000007532   ⟹   ENSHGLP00000007447
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475128,703,108 - 29,080,750 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000007533   ⟹   ENSHGLP00000007448
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475128,703,108 - 29,080,750 (+)Ensembl
RefSeq Acc Id: XM_004845276   ⟹   XP_004845333
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475128,702,797 - 29,080,751 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004845333 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05480 (Get FASTA)   NCBI Sequence Viewer  
  EHB05481 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007447
Reference Protein Sequences
RefSeq Acc Id: XP_004845333   ⟸   XM_004845276
RefSeq Acc Id: ENSHGLP00000007447   ⟸   ENSHGLT00000007532
RefSeq Acc Id: ENSHGLP00000007448   ⟸   ENSHGLT00000007533


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005419 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007532 ENTREZGENE
NCBI Gene Dach1 ENTREZGENE