Cpt1c (carnitine palmitoyltransferase 1C) - Rat Genome Database

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Gene: Cpt1c (carnitine palmitoyltransferase 1C) Heterocephalus glaber
Analyze
Symbol: Cpt1c
Name: carnitine palmitoyltransferase 1C
RGD ID: 18928313
Description: ENCODES a protein that exhibits carnitine O-palmitoyltransferase activity (ortholog); palmitoyl-(protein) hydrolase activity (ortholog); INVOLVED IN carnitine metabolic process (ortholog); fatty acid metabolic process (ortholog); regulation of postsynaptic membrane neurotransmitter receptor levels (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 73 (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); axon (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carnitine O-palmitoyltransferase 1, brain isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,577,620 - 4,591,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,578,400 - 4,592,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cpt1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,577,620 - 4,591,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,578,400 - 4,592,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CPT1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,690,662 - 49,713,731 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,690,898 - 49,713,731 (+)EnsemblGRCh38hg38GRCh38
GRCh371950,194,105 - 50,216,988 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,886,219 - 54,908,800 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,886,218 - 54,908,800NCBI
Celera1947,063,733 - 47,086,445 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,571,009 - 46,594,220 (+)NCBIHuRef
CHM1_11950,196,164 - 50,218,780 (+)NCBICHM1_1
T2T-CHM13v2.01952,690,730 - 52,713,875 (+)NCBIT2T-CHM13v2.0
Cpt1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,607,907 - 44,624,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,608,796 - 44,624,275 (-)EnsemblGRCm39 Ensembl
GRCm38744,958,483 - 44,974,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,959,372 - 44,974,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,214,743 - 52,230,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,827,415 - 44,842,816 (-)NCBIMGSCv36mm8
Celera740,410,981 - 40,426,356 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.07NCBI
Cpt1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,579,297 - 104,593,824 (-)NCBIGRCr8
mRatBN7.2195,442,814 - 95,457,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,442,817 - 95,457,342 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,828,216 - 100,842,682 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,300,881 - 109,315,348 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,591,275 - 102,605,741 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,955,094 - 100,970,579 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,955,095 - 100,969,560 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,019,483 - 102,034,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,432,958 - 95,447,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,511,195 - 95,524,711 (-)NCBI
Celera189,704,373 - 89,718,810 (-)NCBICelera
Cytogenetic Map1q22NCBI
Cpt1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555591,187,858 - 1,203,523 (-)NCBIChiLan1.0ChiLan1.0
CPT1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,808,373 - 55,830,658 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,729,118 - 57,751,402 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,705,711 - 46,727,996 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,625,794 - 55,647,520 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,626,831 - 55,647,394 (+)Ensemblpanpan1.1panPan2
CPT1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,826,207 - 106,847,117 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,826,303 - 106,846,446 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,410,071 - 106,430,708 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,347,891 - 107,368,574 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,342,847 - 107,373,187 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,020,193 - 107,040,828 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,662,212 - 106,682,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,502,688 - 107,523,376 (-)NCBIUU_Cfam_GSD_1.0
Cpt1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,886,951 - 21,908,096 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,505,106 - 3,529,678 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,505,146 - 3,526,286 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPT1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,731,557 - 54,749,248 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,732,701 - 54,747,706 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,462,134 - 50,476,782 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPT1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,865,706 - 42,885,359 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,866,921 - 42,885,185 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,810,843 - 22,833,543 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007255   ⟹   ENSHGLP00000007170
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248324,577,620 - 4,591,550 (-)Ensembl
RefSeq Acc Id: XM_004866894   ⟹   XP_004866951
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,578,400 - 4,592,919 (-)NCBI
RefSeq Acc Id: XM_004866896   ⟹   XP_004866953
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,578,784 - 4,592,929 (-)NCBI
RefSeq Acc Id: XM_013066377   ⟹   XP_012921831
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,578,400 - 4,592,917 (-)NCBI
RefSeq Acc Id: XM_021245782   ⟹   XP_021101441
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,578,400 - 4,592,916 (-)NCBI
RefSeq Acc Id: XR_002389838
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,579,063 - 4,592,933 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004866951 (Get FASTA)   NCBI Sequence Viewer  
  XP_004866953 (Get FASTA)   NCBI Sequence Viewer  
  XP_012921831 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101441 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007170
Reference Protein Sequences
RefSeq Acc Id: XP_004866951   ⟸   XM_004866894
- Peptide Label: isoform X1
- UniProtKB: G5B8Q5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921831   ⟸   XM_013066377
- Peptide Label: isoform X3
- UniProtKB: G5B8Q5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101441   ⟸   XM_021245782
- Peptide Label: isoform X2
- UniProtKB: G5B8Q5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866953   ⟸   XM_004866896
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000007170   ⟸   ENSHGLT00000007255


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005229 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007255 ENTREZGENE
Gene3D-CATH 6.10.250.1760 UniProtKB/TrEMBL
  Chloramphenicol acetyltransferase-like domain UniProtKB/TrEMBL
  Choline/Carnitine o-acyltransferase, domain 2 UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/TrEMBL
  CPT_N UniProtKB/TrEMBL
NCBI Gene Cpt1c ENTREZGENE
PANTHER CARNITINE O-ACYLTRANSFERASE UniProtKB/TrEMBL
  CARNITINE O-PALMITOYLTRANSFERASE 1, BRAIN ISOFORM UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/TrEMBL
  CPT_N UniProtKB/TrEMBL
PROSITE ACYLTRANSF_C_1 UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/TrEMBL
Superfamily-SCOP CoA-dependent acyltransferases UniProtKB/TrEMBL
UniProt G5B8Q5 ENTREZGENE, UniProtKB/TrEMBL