Btbd17 (BTB domain containing 17) - Rat Genome Database

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Gene: Btbd17 (BTB domain containing 17) Heterocephalus glaber
Analyze
Symbol: Btbd17
Name: BTB domain containing 17
RGD ID: 18928038
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,319,607 - 4,324,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,319,216 - 4,325,131 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Btbd17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,319,607 - 4,324,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,319,216 - 4,325,131 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BTBD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,356,416 - 74,363,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,356,416 - 74,361,868 (-)EnsemblGRCh38hg38GRCh38
GRCh371772,352,555 - 72,358,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,864,150 - 69,869,553 (-)NCBINCBI36Build 36hg18NCBI36
Celera1768,945,277 - 68,950,680 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,762,254 - 67,767,273 (-)NCBIHuRef
CHM1_11772,417,197 - 72,422,598 (-)NCBICHM1_1
T2T-CHM13v2.01775,247,050 - 75,253,964 (-)NCBIT2T-CHM13v2.0
Btbd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,681,495 - 114,692,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,682,043 - 114,686,771 (-)EnsemblGRCm39 Ensembl
GRCm3811114,790,669 - 114,801,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,791,217 - 114,795,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711114,651,983 - 114,657,206 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,606,759 - 114,611,982 (-)NCBIMGSCv36mm8
Celera11126,551,653 - 126,556,876 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.54NCBI
Btbd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,325,177 - 100,331,669 (-)NCBIGRCr8
mRatBN7.21099,826,132 - 99,832,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,826,132 - 99,832,624 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,884,580 - 104,891,092 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,347,701 - 104,354,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,747,201 - 99,753,689 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,334,052 - 103,341,820 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,334,052 - 103,340,922 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010102,991,771 - 102,999,504 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,674,002 - 104,680,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,416,268 - 98,422,760 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Btbd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,247,702 - 1,252,581 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,247,702 - 1,271,777 (-)NCBIChiLan1.0ChiLan1.0
BTBD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,386,874 - 90,402,269 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,209,808 - 95,225,216 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,295,368 - 68,302,595 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,853,405 - 73,858,760 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,853,645 - 73,858,684 (-)Ensemblpanpan1.1panPan2
BTBD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,046,811 - 6,052,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,047,911 - 6,052,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,668,812 - 6,674,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,719,394 - 6,725,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,720,247 - 6,724,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,759,917 - 6,765,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,863,516 - 6,869,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,923,390 - 6,929,270 (+)NCBIUU_Cfam_GSD_1.0
Btbd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,628,736 - 6,633,081 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655126,622 - 130,898 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655126,645 - 130,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,770,172 - 6,775,152 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,770,105 - 6,775,595 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,735,809 - 6,741,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BTBD17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,262,362 - 47,277,915 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1647,272,495 - 47,277,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607718,075,667 - 18,091,150 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004860586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01070727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000018060   ⟹   ENSHGLP00000017883
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248014,319,607 - 4,324,214 (-)Ensembl
RefSeq Acc Id: XM_004860586   ⟹   XP_004860643
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248014,319,216 - 4,325,131 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004860643 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017883
RefSeq Acc Id: XP_004860643   ⟸   XM_004860586
Ensembl Acc Id: ENSHGLP00000017883   ⟸   ENSHGLT00000018060


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012810 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018060 ENTREZGENE
NCBI Gene Btbd17 ENTREZGENE