Larp4 (La ribonucleoprotein 4) - Rat Genome Database

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Gene: Larp4 (La ribonucleoprotein 4) Heterocephalus glaber
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Symbol: Larp4
Name: La ribonucleoprotein 4
RGD ID: 18927983
Description: ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); poly(A) binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); positive regulation of translation (ortholog); post-transcriptional regulation of gene expression (ortholog); ASSOCIATED WITH genetic disease (ortholog); polycystic ovary syndrome (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: La ribonucleoprotein domain family member 4; la-related protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248161,879,731 - 1,943,224 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Larp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248161,879,731 - 1,943,224 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LARP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381250,400,885 - 50,480,004 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1250,392,383 - 50,480,004 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,794,668 - 50,873,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361249,080,917 - 49,160,055 (+)NCBINCBI36Build 36hg18NCBI36
Celera1249,590,531 - 49,670,923 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,827,472 - 47,906,426 (+)NCBIHuRef
CHM1_11250,760,745 - 50,840,185 (+)NCBICHM1_1
T2T-CHM13v2.01250,363,921 - 50,443,087 (+)NCBIT2T-CHM13v2.0
Larp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,867,946 - 99,914,239 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,867,946 - 99,914,239 (+)EnsemblGRCm39 Ensembl
GRCm381599,970,065 - 100,016,358 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,970,065 - 100,016,358 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,800,505 - 99,846,789 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,798,301 - 99,844,653 (+)NCBIMGSCv36mm8
Celera15102,125,453 - 102,171,992 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Larp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,983,276 - 133,031,514 (+)NCBIGRCr8
mRatBN7.27131,104,470 - 131,152,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,101,564 - 131,150,811 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07141,630,229 - 141,676,242 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X116,168,986 - 116,180,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,721,956 - 138,782,046 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7127,583,683 - 127,631,712 (+)NCBICelera
Cytogenetic Map7q36NCBI
Larp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547930,988 - 996,877 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547930,988 - 996,877 (+)NCBIChiLan1.0ChiLan1.0
LARP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21043,708,992 - 43,788,094 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11243,705,752 - 43,784,849 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,276,200 - 38,355,281 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,175,129 - 39,253,491 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,175,129 - 39,253,543 (-)Ensemblpanpan1.1panPan2
LARP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,255,070 - 4,408,066 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,256,040 - 4,325,987 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,824,057 - 42,005,763 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,300,613 - 4,482,850 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,302,570 - 4,373,658 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,266,265 - 4,447,412 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,253,948 - 4,436,099 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02742,218,512 - 42,400,838 (+)NCBIUU_Cfam_GSD_1.0
Larp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,069,199 - 65,142,878 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,023,891 - 8,095,919 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365128,024,121 - 8,093,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LARP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl516,177,235 - 16,353,546 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1516,177,245 - 16,353,548 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,652,607 - 16,886,399 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LARP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,647,743 - 46,704,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,652,248 - 46,704,549 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037199,402,273 - 199,485,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004862982   ⟹   XP_004863039
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248161,879,731 - 1,943,224 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004863039 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004863039   ⟸   XM_004862982


Additional Information

Database Acc Id Source(s)
NCBI Gene Larp4 ENTREZGENE