Rnaseh2c (ribonuclease H2 subunit C) - Rat Genome Database

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Gene: Rnaseh2c (ribonuclease H2 subunit C) Heterocephalus glaber
Analyze
Symbol: Rnaseh2c
Name: ribonuclease H2 subunit C
RGD ID: 18927822
Description: INVOLVED IN RNA catabolic process (inferred); ASSOCIATED WITH Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN ribonuclease H2 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,667,418 - 20,668,490 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,667,401 - 20,668,490 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnaseh2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,667,418 - 20,668,490 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,667,401 - 20,668,490 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RNASEH2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,717,673 - 65,720,798 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,714,005 - 65,720,818 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,485,144 - 65,488,269 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,241,720 - 65,244,985 (-)NCBINCBI36Build 36hg18NCBI36
Celera1162,812,157 - 62,815,292 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,811,997 - 61,815,262 (-)NCBIHuRef
CHM1_11165,369,060 - 65,372,325 (-)NCBICHM1_1
T2T-CHM13v2.01165,711,831 - 65,714,956 (-)NCBIT2T-CHM13v2.0
Rnaseh2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,651,901 - 5,652,987 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,651,901 - 5,657,047 (+)EnsemblGRCm39 Ensembl
GRCm38195,601,873 - 5,602,959 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,601,873 - 5,607,019 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,601,873 - 5,602,959 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,601,873 - 5,602,959 (+)NCBIMGSCv36mm8
Celera195,471,843 - 5,472,929 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Rnaseh2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,323,916 - 212,325,011 (+)NCBIGRCr8
mRatBN7.21202,894,626 - 202,895,675 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,894,643 - 202,897,516 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,246,936 - 211,247,985 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,340,018 - 218,341,067 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,031,069 - 211,032,118 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,966,626 - 220,967,717 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,966,655 - 220,967,825 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,897,678 - 227,898,767 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,232,298 - 208,233,903 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,430,341 - 200,431,432 (+)NCBICelera
Cytogenetic Map1q43NCBI
Rnaseh2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,556,396 - 19,557,307 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,556,129 - 19,557,416 (+)NCBIChiLan1.0ChiLan1.0
RNASEH2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,947,333 - 66,954,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,992,131 - 67,993,361 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,076,731 - 61,079,994 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,412,745 - 64,413,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,411,804 - 64,413,819 (-)Ensemblpanpan1.1panPan2
RNASEH2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,498,282 - 51,501,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,498,308 - 51,499,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,106,789 - 50,110,359 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,536,418 - 52,539,985 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,536,446 - 52,537,679 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,635,921 - 51,639,491 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,210,549 - 51,214,119 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,000,004 - 52,003,571 (+)NCBIUU_Cfam_GSD_1.0
Rnaseh2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,323,991 - 7,325,104 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,766,242 - 3,767,345 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,766,330 - 3,767,453 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNASEH2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,563,091 - 6,564,274 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,563,093 - 6,564,281 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,667,133 - 5,668,321 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNASEH2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,526,761 - 8,535,984 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,526,788 - 8,528,027 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,819,842 - 105,826,376 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000018998   ⟹   ENSHGLP00000018810
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476720,667,418 - 20,668,490 (+)Ensembl
RefSeq Acc Id: XM_004852382   ⟹   XP_004852439
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476720,667,406 - 20,668,490 (+)NCBI
RefSeq Acc Id: XM_021264579   ⟹   XP_021120238
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476720,667,401 - 20,668,490 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852439 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120238 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04870 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018810
  ENSHGLP00100026393
GenBank Protein JAO03035 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021120238   ⟸   XM_021264579
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004852439   ⟸   XM_004852382
- Peptide Label: isoform X2
- UniProtKB: G5B6J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018810   ⟸   ENSHGLT00000018998


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013478 Ensembl, ENTREZGENE
  ENSHGLG00100019352 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000018998 ENTREZGENE
  ENSHGLT00100026661 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.680 UniProtKB/TrEMBL
InterPro RNase_H2_suC UniProtKB/TrEMBL
NCBI Gene Rnaseh2c ENTREZGENE
PANTHER RIBONUCLEASE H2 SUBUNIT C UniProtKB/TrEMBL
  RIBONUCLEASE H2 SUBUNIT C UniProtKB/TrEMBL
Pfam RNase_H2_suC UniProtKB/TrEMBL
UniProt G5B6J3 ENTREZGENE, UniProtKB/TrEMBL