Scg5 (secretogranin V) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Scg5 (secretogranin V) Heterocephalus glaber
Analyze
Symbol: Scg5
Name: secretogranin V
RGD ID: 18927427
Description: ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); unfolded protein binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); peptide hormone processing (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Neuroendocrine protein 7B2; secretogranin V (7B2 protein)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248041,660,371 - 1,711,169 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Scg5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248041,660,371 - 1,711,169 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SCG5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381532,641,710 - 32,697,092 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1532,641,676 - 32,697,098 (+)EnsemblGRCh38hg38GRCh38
GRCh371532,933,911 - 32,989,293 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361530,721,252 - 30,776,590 (+)NCBINCBI36Build 36hg18NCBI36
Build 341530,721,251 - 30,776,590NCBI
Celera159,735,550 - 9,791,154 (+)NCBICelera
Cytogenetic Map15q13.3NCBI
HuRef159,796,189 - 9,851,652 (+)NCBIHuRef
CHM1_11533,051,914 - 33,107,353 (+)NCBICHM1_1
T2T-CHM13v2.01530,438,200 - 30,493,619 (+)NCBIT2T-CHM13v2.0
Scg5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392113,606,708 - 113,659,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2113,606,707 - 113,659,466 (-)EnsemblGRCm39 Ensembl
GRCm382113,776,313 - 113,829,091 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2113,776,362 - 113,829,121 (-)EnsemblGRCm38mm10GRCm38
MGSCv372113,616,470 - 113,669,248 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362113,577,206 - 113,629,965 (-)NCBIMGSCv36mm8
Celera2114,909,627 - 114,958,933 (-)NCBICelera
Cytogenetic Map2E4NCBI
cM Map257.45NCBI
Scg5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83120,998,420 - 121,042,881 (-)NCBIGRCr8
mRatBN7.23100,544,101 - 100,588,558 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3100,544,099 - 100,588,463 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3104,171,047 - 104,215,378 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03112,770,077 - 112,814,414 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03110,459,966 - 110,504,303 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03105,235,065 - 105,279,475 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3105,235,050 - 105,279,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03111,811,718 - 111,856,212 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4399,629,194 - 99,674,523 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1399,525,619 - 99,570,949 (-)NCBI
Celera399,515,552 - 99,558,902 (-)NCBICelera
RH 3.4 Map3840.41RGD
Cytogenetic Map3q35NCBI
Scg5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554161,866,997 - 1,914,640 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554161,867,848 - 1,914,505 (-)NCBIChiLan1.0ChiLan1.0
SCG5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21621,409,656 - 21,465,388 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11526,131,284 - 26,187,027 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01511,136,920 - 11,192,606 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11529,974,633 - 30,030,291 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1529,974,633 - 30,030,291 (+)Ensemblpanpan1.1panPan2
SCG5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1302,261,144 - 2,315,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl302,261,189 - 2,315,213 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha302,310,629 - 2,364,774 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0302,373,662 - 2,427,835 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl302,373,665 - 2,427,885 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1302,310,404 - 2,364,530 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0302,409,276 - 2,463,487 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0302,537,616 - 2,591,809 (-)NCBIUU_Cfam_GSD_1.0
Scg5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864080,784,633 - 80,839,707 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366731,311,861 - 1,367,237 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366731,312,183 - 1,367,205 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCG5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1136,525,944 - 136,593,583 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11136,525,920 - 136,590,021 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21152,695,828 - 152,711,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCG5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12650,182,966 - 50,243,284 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2650,189,473 - 50,243,282 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604890,640,439 - 90,694,840 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004861503   ⟹   XP_004861560
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248041,660,371 - 1,711,164 (-)NCBI
RefSeq Acc Id: XM_004861504   ⟹   XP_004861561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248041,660,371 - 1,711,162 (-)NCBI
RefSeq Acc Id: XM_021241880   ⟹   XP_021097539
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248041,660,371 - 1,711,169 (-)NCBI
RefSeq Acc Id: XM_021241881   ⟹   XP_021097540
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248041,660,371 - 1,711,168 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004861560 (Get FASTA)   NCBI Sequence Viewer  
  XP_004861561 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097539 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097540 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13604 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011035
  ENSHGLP00100013504
GenBank Protein JAO03046 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021097539   ⟸   XM_021241880
- Peptide Label: isoform X1
- UniProtKB: G5BWE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097540   ⟸   XM_021241881
- Peptide Label: isoform X2
- UniProtKB: G5BWE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861560   ⟸   XM_004861503
- Peptide Label: isoform X3
- UniProtKB: G5BWE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861561   ⟸   XM_004861504
- Peptide Label: isoform X4
- UniProtKB: A0A0N8EUU7 (UniProtKB/TrEMBL),   G5BWE3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007916 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100009983 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000011159 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100013659 UniProtKB/TrEMBL
InterPro Secretogranin_V UniProtKB/TrEMBL
NCBI Gene Scg5 ENTREZGENE
PANTHER NEUROENDOCRINE PROTEIN 7B2 UniProtKB/TrEMBL
  PTHR12738 UniProtKB/TrEMBL
Pfam Secretogranin_V UniProtKB/TrEMBL
UniProt A0A0N8EUU7 ENTREZGENE, UniProtKB/TrEMBL
  G5BWE3 ENTREZGENE, UniProtKB/TrEMBL