Prg3 (proteoglycan 3, pro eosinophil major basic protein 2) - Rat Genome Database

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Gene: Prg3 (proteoglycan 3, pro eosinophil major basic protein 2) Heterocephalus glaber
Analyze
Symbol: Prg3
Name: proteoglycan 3, pro eosinophil major basic protein 2
RGD ID: 18927388
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); INVOLVED IN basophil activation (ortholog); histamine biosynthetic process (ortholog); leukotriene biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteoglycan 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,220,811 - 3,225,554 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,220,811 - 3,225,556 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Prg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,220,811 - 3,225,554 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,220,811 - 3,225,556 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PRG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,376,769 - 57,381,150 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,376,769 - 57,381,150 (-)EnsemblGRCh38hg38GRCh38
GRCh371157,144,242 - 57,148,623 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,900,819 - 56,905,199 (-)NCBINCBI36Build 36hg18NCBI36
Build 341156,900,818 - 56,905,199NCBI
Celera1154,500,834 - 54,505,212 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,493,527 - 53,497,906 (-)NCBIHuRef
CHM1_11157,010,267 - 57,014,646 (-)NCBICHM1_1
T2T-CHM13v2.01157,326,801 - 57,331,179 (-)NCBIT2T-CHM13v2.0
Prg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,818,540 - 84,826,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,818,559 - 84,824,230 (+)EnsemblGRCm39 Ensembl
GRCm38284,988,196 - 84,996,559 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,988,215 - 84,993,886 (+)EnsemblGRCm38mm10GRCm38
MGSCv37284,828,372 - 84,834,043 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,789,054 - 84,794,725 (+)NCBIMGSCv36mm8
Celera286,586,893 - 86,592,575 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Prg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,478,627 - 90,484,760 (+)NCBIGRCr8
mRatBN7.2370,071,970 - 70,078,103 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl370,072,497 - 70,078,102 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,454,403 - 73,460,012 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0382,053,078 - 82,058,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,811,533 - 79,817,139 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,395,194 - 72,401,254 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,395,218 - 72,401,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,905,235 - 78,911,291 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4368,219,693 - 68,225,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1368,117,184 - 68,121,465 (+)NCBI
Celera369,423,493 - 69,429,102 (+)NCBICelera
Cytogenetic Map3q24NCBI
PRG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,533,284 - 58,537,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,550,234 - 59,554,604 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,617,688 - 52,622,058 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13160,108,051 - 160,112,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3160,108,051 - 160,112,421 (-)Ensemblpanpan1.1panPan2
PRG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,765,682 - 38,769,711 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,766,095 - 38,769,711 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,311,611 - 38,315,298 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,447,340 - 39,451,027 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1839,447,193 - 39,451,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11839,029,965 - 39,033,652 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,603,469 - 38,607,156 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,234,210 - 39,237,897 (+)NCBIUU_Cfam_GSD_1.0
Prg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494714,994,856 - 14,999,707 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365815,109,165 - 5,113,411 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365815,109,165 - 5,113,617 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100625180
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1213,525,472 - 13,529,620 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2213,320,609 - 13,324,730 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,860,460 - 15,865,716 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,861,078 - 15,865,711 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038113,205,376 - 113,209,703 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013067471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01093909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000021622   ⟹   ENSHGLP00000021413
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248643,220,811 - 3,225,554 (+)Ensembl
RefSeq Acc Id: XM_013067471   ⟹   XP_012922925
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,220,811 - 3,225,556 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012922925 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021413
RefSeq Acc Id: XP_012922925   ⟸   XM_013067471
- UniProtKB: G5BLI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021413   ⟸   ENSHGLT00000021622


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015300 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021622 ENTREZGENE
Gene3D-CATH Mannose-Binding Protein A, subunit A UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Eosinophil_major_basic UniProtKB/TrEMBL
NCBI Gene Prg3 ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PRINTS EMAJORBASICP UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type lectin-like UniProtKB/TrEMBL
UniProt G5BLI8 ENTREZGENE, UniProtKB/TrEMBL