C2cd3 (C2 domain containing 3 centriole elongation regulator) - Rat Genome Database

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Gene: C2cd3 (C2 domain containing 3 centriole elongation regulator) Heterocephalus glaber
Analyze
Symbol: C2cd3
Name: C2 domain containing 3 centriole elongation regulator
RGD ID: 18927302
Description: INVOLVED IN brain development (ortholog); cilium assembly (ortholog); embryonic digit morphogenesis (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Agenesis of Corpus Callosum (ortholog); asphyxiating thoracic dystrophy (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C2 calcium dependent domain containing 3; C2 domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248172,880,976 - 3,042,004 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248172,880,775 - 3,060,399 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
C2cd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248172,880,976 - 3,042,004 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248172,880,775 - 3,060,399 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C2CD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381174,012,718 - 74,171,002 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1174,012,718 - 74,171,210 (-)EnsemblGRCh38hg38GRCh38
GRCh371173,723,763 - 73,882,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,423,128 - 73,559,712 (-)NCBINCBI36Build 36hg18NCBI36
Celera1171,052,284 - 71,188,859 (-)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1170,041,381 - 70,177,322 (-)NCBIHuRef
CHM1_11173,629,333 - 73,766,320 (-)NCBICHM1_1
T2T-CHM13v2.01173,942,048 - 74,100,346 (-)NCBIT2T-CHM13v2.0
C2cd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,021,440 - 100,119,366 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,021,440 - 100,119,359 (+)EnsemblGRCm39 Ensembl
GRCm387100,372,229 - 100,470,159 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7100,372,233 - 100,470,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv377107,520,743 - 107,618,668 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367100,248,501 - 100,344,232 (+)NCBIMGSCv36mm8
Celera7100,709,229 - 100,807,748 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.35NCBI
C2cd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81164,127,304 - 164,225,088 (+)NCBIGRCr8
mRatBN7.21154,715,151 - 154,812,955 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1154,715,310 - 154,812,520 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1162,709,885 - 162,807,531 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01169,889,987 - 169,987,632 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,763,942 - 162,861,529 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01165,382,279 - 165,480,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1165,382,690 - 165,479,655 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,583,008 - 171,680,742 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,774,397 - 157,892,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,853,000 - 157,955,514 (+)NCBI
Celera1152,799,056 - 152,895,063 (+)NCBICelera
Cytogenetic Map1q32NCBI
C2cd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541417,444,515 - 17,558,245 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541417,444,299 - 17,557,912 (+)NCBIChiLan1.0ChiLan1.0
C2CD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2974,954,310 - 75,113,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11175,998,226 - 76,157,932 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01169,085,434 - 69,244,791 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11172,392,606 - 72,551,620 (-)NCBIpanpan1.1PanPan1.1panPan2
C2CD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12124,127,390 - 24,272,473 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2124,127,598 - 24,272,657 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2123,892,149 - 24,042,850 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02124,330,910 - 24,481,957 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2124,331,191 - 24,479,277 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12124,127,093 - 24,274,828 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02124,326,702 - 24,477,415 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02124,241,941 - 24,392,962 (+)NCBIUU_Cfam_GSD_1.0
C2cd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494761,499,810 - 61,642,747 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364983,099,396 - 3,242,335 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364983,099,419 - 3,242,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2CD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl98,393,612 - 8,512,848 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.198,393,610 - 8,512,843 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.299,289,856 - 9,349,672 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C2CD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,282,311 - 65,436,007 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl165,282,318 - 65,435,834 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604360,428,341 - 60,584,199 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021243314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021243322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002388986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002388987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002388988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01079096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01079107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01003236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000016631   ⟹   ENSHGLP00000016462
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248172,880,976 - 3,042,004 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000016632   ⟹   ENSHGLP00000016463
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248172,880,976 - 3,034,124 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000016633   ⟹   ENSHGLP00000016464
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248172,992,982 - 3,041,946 (+)Ensembl
RefSeq Acc Id: XM_021243314   ⟹   XP_021098973
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,055,907 (+)NCBI
RefSeq Acc Id: XM_021243315   ⟹   XP_021098974
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,053,763 (+)NCBI
RefSeq Acc Id: XM_021243316   ⟹   XP_021098975
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,042,632 (+)NCBI
RefSeq Acc Id: XM_021243317   ⟹   XP_021098976
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,042,797 (+)NCBI
RefSeq Acc Id: XM_021243318   ⟹   XP_021098977
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,042,797 (+)NCBI
RefSeq Acc Id: XM_021243319   ⟹   XP_021098978
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,053,508 (+)NCBI
RefSeq Acc Id: XM_021243320   ⟹   XP_021098979
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,042,632 (+)NCBI
RefSeq Acc Id: XM_021243321   ⟹   XP_021098980
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,028,700 (+)NCBI
RefSeq Acc Id: XM_021243322   ⟹   XP_021098981
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,060,399 (+)NCBI
RefSeq Acc Id: XR_002388986
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,880,775 - 3,057,740 (+)NCBI
RefSeq Acc Id: XR_002388987
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,909,324 - 3,057,741 (+)NCBI
RefSeq Acc Id: XR_002388988
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248172,909,324 - 3,057,741 (+)NCBI
RefSeq Acc Id: XP_021098981   ⟸   XM_021243322
- Peptide Label: isoform X9
- UniProtKB: A0AAX6RNU9 (UniProtKB/TrEMBL),   G5AS95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098973   ⟸   XM_021243314
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RQA2 (UniProtKB/TrEMBL),   G5AS95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098974   ⟸   XM_021243315
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RR37 (UniProtKB/TrEMBL),   G5AS95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098978   ⟸   XM_021243319
- Peptide Label: isoform X6
- UniProtKB: A0AAX6RRR4 (UniProtKB/TrEMBL),   A0A0P6J9Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098976   ⟸   XM_021243317
- Peptide Label: isoform X4
- UniProtKB: A0AAX6RQY9 (UniProtKB/TrEMBL),   G5AS95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098977   ⟸   XM_021243318
- Peptide Label: isoform X5
- UniProtKB: A0AAX6RTA1 (UniProtKB/TrEMBL),   A0A0P6J9Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098975   ⟸   XM_021243316
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RSC7 (UniProtKB/TrEMBL),   G5AS95 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098979   ⟸   XM_021243320
- Peptide Label: isoform X7
- UniProtKB: A0AAX6RRD4 (UniProtKB/TrEMBL),   A0A0P6J9Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098980   ⟸   XM_021243321
- Peptide Label: isoform X8
- UniProtKB: A0AAX6RUI7 (UniProtKB/TrEMBL),   A0A0P6J9Q9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000016463   ⟸   ENSHGLT00000016632
Ensembl Acc Id: ENSHGLP00000016462   ⟸   ENSHGLT00000016631
Ensembl Acc Id: ENSHGLP00000016464   ⟸   ENSHGLT00000016633


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011779 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016631 ENTREZGENE
  ENSHGLT00000016632 ENTREZGENE
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_C2CD3 UniProtKB/TrEMBL
  C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
NCBI Gene C2cd3 ENTREZGENE
PANTHER C2 DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A0P6J9Q9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RNU9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQA2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQY9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RR37 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RRD4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RRR4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RSC7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RTA1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RUI7 ENTREZGENE, UniProtKB/TrEMBL
  G5AS95 ENTREZGENE, UniProtKB/TrEMBL