Incenp (inner centromere protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Incenp (inner centromere protein) Heterocephalus glaber
Analyze
Symbol: Incenp
Name: inner centromere protein
RGD ID: 18927211
Description: ENCODES a protein that exhibits molecular function activator activity (ortholog); INVOLVED IN cell division (inferred); chromosome segregation (inferred); meiotic spindle midzone assembly (inferred); ASSOCIATED WITH Familial Prostate Cancer (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN central element (ortholog); chromocenter (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926407,362 - 419,566 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926405,354 - 422,492 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Incenp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926407,362 - 419,566 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926405,354 - 422,492 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
INCENP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,124,011 - 62,153,169 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,123,998 - 62,155,474 (+)EnsemblGRCh38hg38GRCh38
GRCh371161,891,483 - 61,920,641 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,648,021 - 61,677,211 (+)NCBINCBI36Build 36hg18NCBI36
Build 341161,652,209 - 61,676,800NCBI
Celera1159,220,885 - 59,250,081 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,219,712 - 58,248,907 (+)NCBIHuRef
CHM1_11161,774,635 - 61,803,822 (+)NCBICHM1_1
T2T-CHM13v2.01162,113,566 - 62,142,731 (+)NCBIT2T-CHM13v2.0
Incenp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,849,659 - 9,876,853 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl199,849,660 - 9,876,915 (-)EnsemblGRCm39 Ensembl
GRCm38199,872,295 - 9,899,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl199,872,296 - 9,899,551 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,946,787 - 9,974,023 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36199,939,391 - 9,966,514 (-)NCBIMGSCv36mm8
Celera1910,569,299 - 10,596,535 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.1NCBI
Incenp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,945,558 - 216,017,247 (-)NCBIGRCr8
mRatBN7.21206,520,655 - 206,550,575 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1206,523,380 - 206,553,265 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,895,199 - 214,921,937 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,956,915 - 221,983,258 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,651,921 - 214,678,265 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,923,448 - 225,953,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,925,773 - 225,952,516 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,871,812 - 232,901,748 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,326,516 - 212,352,859 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,485,269 - 212,549,851 (-)NCBI
Celera1204,019,020 - 204,045,363 (-)NCBICelera
Cytogenetic Map1q43NCBI
Incenp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,706,201 - 5,720,772 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,705,948 - 5,724,167 (-)NCBIChiLan1.0ChiLan1.0
INCENP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,357,689 - 63,388,402 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,401,321 - 64,432,034 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,488,790 - 57,519,552 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,846,199 - 60,876,553 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,846,199 - 60,874,540 (+)Ensemblpanpan1.1panPan2
INCENP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,361,376 - 54,384,649 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,361,378 - 54,384,641 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,931,294 - 52,954,651 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,414,975 - 55,438,324 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1855,414,975 - 55,439,285 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,476,651 - 54,496,677 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,084,698 - 54,108,057 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,949,474 - 54,972,843 (-)NCBIUU_Cfam_GSD_1.0
Incenp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,882,741 - 10,914,357 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581999,497 - 1,025,062 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581999,148 - 1,028,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INCENP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,411,942 - 9,445,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,411,942 - 9,445,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,858,115 - 8,889,717 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INCENP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,695,803 - 11,725,633 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,692,559 - 11,720,940 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038109,041,245 - 109,071,336 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000004393   ⟹   ENSHGLP00000004333
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624926407,362 - 419,566 (-)Ensembl
RefSeq Acc Id: XM_013069136   ⟹   XP_012924590
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926407,105 - 422,488 (-)NCBI
RefSeq Acc Id: XM_021251834   ⟹   XP_021107493
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926407,105 - 422,490 (-)NCBI
RefSeq Acc Id: XM_021251835   ⟹   XP_021107494
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926407,335 - 422,490 (-)NCBI
RefSeq Acc Id: XM_021251836   ⟹   XP_021107495
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926405,354 - 422,491 (-)NCBI
RefSeq Acc Id: XM_021251837   ⟹   XP_021107496
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926407,335 - 422,489 (-)NCBI
RefSeq Acc Id: XM_021251838   ⟹   XP_021107497
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926407,335 - 422,491 (-)NCBI
RefSeq Acc Id: XM_021251840   ⟹   XP_021107499
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926405,354 - 422,492 (-)NCBI
RefSeq Acc Id: XM_021251841   ⟹   XP_021107500
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624926407,335 - 422,489 (-)NCBI
RefSeq Acc Id: XP_021107499   ⟸   XM_021251840
- Peptide Label: isoform X6
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107495   ⟸   XM_021251836
- Peptide Label: isoform X3
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107493   ⟸   XM_021251834
- Peptide Label: isoform X1
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924590   ⟸   XM_013069136
- Peptide Label: isoform X8
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107497   ⟸   XM_021251838
- Peptide Label: isoform X5
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107494   ⟸   XM_021251835
- Peptide Label: isoform X2
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107500   ⟸   XM_021251841
- Peptide Label: isoform X7
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107496   ⟸   XM_021251837
- Peptide Label: isoform X4
- UniProtKB: G5AYF0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000004333   ⟸   ENSHGLT00000004393


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003168 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004393 ENTREZGENE
Gene3D-CATH 1.20.5.3600 UniProtKB/TrEMBL
  6.10.250.2990 UniProtKB/TrEMBL
InterPro INCENP_N UniProtKB/TrEMBL
  Inner_centromere_prot_ARK-bd UniProtKB/TrEMBL
NCBI Gene Incenp ENTREZGENE
PANTHER INNER CENTROMERE PROTEIN UniProtKB/TrEMBL
  INNER CENTROMERE PROTEIN UniProtKB/TrEMBL
Pfam INCENP_ARK-bind UniProtKB/TrEMBL
  INCENP_N UniProtKB/TrEMBL
UniProt A0AAX6QPZ1_HETGA UniProtKB/TrEMBL
  A0AAX6SF40_HETGA UniProtKB/TrEMBL
  A0AAX6SFC4_HETGA UniProtKB/TrEMBL
  A0AAX6SFJ2_HETGA UniProtKB/TrEMBL
  A0AAX6SG10_HETGA UniProtKB/TrEMBL
  A0AAX6SGE8_HETGA UniProtKB/TrEMBL
  A0AAX6SHI0_HETGA UniProtKB/TrEMBL
  A0AAX6SI45_HETGA UniProtKB/TrEMBL
  G5AYF0 ENTREZGENE, UniProtKB/TrEMBL