Pclo (piccolo presynaptic cytomatrix protein) - Rat Genome Database

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Gene: Pclo (piccolo presynaptic cytomatrix protein) Heterocephalus glaber
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Symbol: Pclo
Name: piccolo presynaptic cytomatrix protein
RGD ID: 18927108
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); profilin binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); insulin secretion (ortholog); modulation of excitatory postsynaptic potential (ortholog); ASSOCIATED WITH CHARGE syndrome (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); cone cell pedicle (ortholog); cytoskeleton of presynaptic active zone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein piccolo
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473931,143,872 - 31,448,524 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pclo
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473931,143,872 - 31,448,524 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PCLO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38782,754,012 - 83,162,884 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl782,754,012 - 83,162,930 (-)EnsemblGRCh38hg38GRCh38
GRCh37782,383,328 - 82,792,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36782,225,378 - 82,630,133 (-)NCBINCBI36Build 36hg18NCBI36
Build 34782,188,346 - 82,224,200NCBI
Celera777,083,829 - 77,492,761 (-)NCBICelera
Cytogenetic Map7q21.11NCBI
HuRef776,984,730 - 77,393,999 (-)NCBIHuRef
CHM1_1782,313,403 - 82,722,210 (-)NCBICHM1_1
T2T-CHM13v2.0784,005,231 - 84,414,103 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2781,715,437 - 82,124,409 (-)NCBI
Pclo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39514,564,924 - 14,913,479 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl514,564,932 - 14,913,473 (+)EnsemblGRCm39 Ensembl
GRCm38514,514,906 - 14,863,465 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl514,514,918 - 14,863,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv37514,514,918 - 14,863,459 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36514,520,924 - 14,801,999 (+)NCBIMGSCv36mm8
Celera1224,890,712 - 25,239,859 (+)NCBICelera
Cytogenetic Map5A1- A2NCBI
cM Map56.27NCBI
Pclo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8420,646,604 - 21,005,171 (-)NCBIGRCr8
mRatBN7.2419,691,439 - 20,050,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl419,695,315 - 20,049,885 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx424,865,942 - 25,222,133 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0420,697,245 - 21,053,987 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0419,078,298 - 19,437,003 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0416,454,904 - 17,058,921 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl416,454,904 - 17,058,921 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0416,923,700 - 17,031,648 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0416,428,814 - 16,661,584 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4415,911,051 - 16,269,090 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1415,911,050 - 16,269,090 (-)NCBI
Celera415,219,539 - 15,569,109 (-)NCBICelera
Cytogenetic Map4q12NCBI
Pclo
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554103,152,202 - 3,292,920 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554102,998,345 - 3,334,056 (+)NCBIChiLan1.0ChiLan1.0
PCLO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26100,601,124 - 101,013,577 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17148,865,761 - 149,278,209 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0774,714,364 - 75,126,518 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1788,378,218 - 88,789,302 (-)NCBIpanpan1.1PanPan1.1panPan2
PCLO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11822,385,102 - 22,701,944 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1822,385,100 - 22,706,793 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1821,995,716 - 22,385,731 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01822,770,098 - 23,160,278 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1822,770,852 - 22,983,764 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11822,405,472 - 22,795,049 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01821,940,459 - 22,330,520 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01822,596,545 - 22,986,291 (-)NCBIUU_Cfam_GSD_1.0
Pclo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511864,071,317 - 64,473,183 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367341,277,591 - 1,479,521 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367341,273,055 - 1,674,913 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCLO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl997,114,511 - 97,513,072 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1997,114,503 - 97,513,081 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29107,331,780 - 107,730,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCLO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12165,729,762 - 66,129,806 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604237,825,087 - 38,233,533 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_021253998   ⟹   XP_021109657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473931,143,872 - 31,448,524 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021109657 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021109657   ⟸   XM_021253998


Additional Information

Database Acc Id Source(s)
NCBI Gene Pclo ENTREZGENE