Lmtk3 (lemur tyrosine kinase 3) - Rat Genome Database

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Gene: Lmtk3 (lemur tyrosine kinase 3) Heterocephalus glaber
Analyze
Symbol: Lmtk3
Name: lemur tyrosine kinase 3
RGD ID: 18926922
Description: ASSOCIATED WITH epilepsy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase LMTK3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,313,694 - 5,332,985 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248325,315,204 - 5,332,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
epilepsy  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lmtk3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,313,694 - 5,332,985 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248325,315,204 - 5,332,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LMTK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,485,271 - 48,513,680 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,485,271 - 48,513,935 (-)EnsemblGRCh38hg38GRCh38
GRCh371948,988,528 - 49,016,419 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,680,340 - 53,708,258 (-)NCBINCBI36Build 36hg18NCBI36
Celera1945,853,763 - 45,881,680 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,368,681 - 45,396,172 (-)NCBIHuRef
CHM1_11948,990,233 - 49,018,294 (-)NCBICHM1_1
T2T-CHM13v2.01951,479,429 - 51,507,322 (-)NCBIT2T-CHM13v2.0
Lmtk3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,432,577 - 45,456,315 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,433,162 - 45,453,568 (+)EnsemblGRCm39 Ensembl
GRCm38745,783,134 - 45,804,144 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,783,738 - 45,804,144 (+)EnsemblGRCm38mm10GRCm38
MGSCv37753,039,317 - 53,059,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,653,422 - 45,672,186 (+)NCBIMGSCv36mm8
Celera741,248,006 - 41,268,262 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.5NCBI
Lmtk3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,397,504 - 105,417,146 (+)NCBIGRCr8
mRatBN7.2196,261,058 - 96,280,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,260,977 - 96,280,672 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01101,773,206 - 101,792,420 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,783,621 - 101,792,496 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01102,852,278 - 102,871,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,264,104 - 96,280,856 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera190,515,504 - 90,532,812 (+)NCBICelera
Cytogenetic Map1q22NCBI
Lmtk3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,992,942 - 2,011,578 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,994,851 - 2,011,578 (+)NCBIChiLan1.0ChiLan1.0
LMTK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,590,589 - 54,618,881 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,516,917 - 56,545,201 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,486,885 - 45,515,156 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,078,731 - 54,107,494 (-)NCBIpanpan1.1PanPan1.1panPan2
LMTK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,771,420 - 107,791,090 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,291,649 - 107,312,428 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,294,726 - 108,315,527 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,295,801 - 108,315,974 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,960,866 - 107,981,652 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,608,191 - 107,628,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,444,048 - 108,464,826 (+)NCBIUU_Cfam_GSD_1.0
Lmtk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934920,960,695 - 20,981,810 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,579,250 - 2,599,990 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,579,204 - 2,598,189 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMTK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,882,529 - 53,904,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,883,309 - 53,905,211 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,513,647 - 49,535,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMTK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,746,973 - 41,775,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,753,247 - 41,772,822 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607321,531,337 - 21,560,576 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000009086   ⟹   ENSHGLP00000008991
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248325,313,694 - 5,331,661 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000009087   ⟹   ENSHGLP00000008992
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248325,314,917 - 5,332,985 (+)Ensembl
RefSeq Acc Id: XM_021245836   ⟹   XP_021101495
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,315,206 - 5,332,168 (+)NCBI
RefSeq Acc Id: XM_021245837   ⟹   XP_021101496
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,315,204 - 5,332,168 (+)NCBI
RefSeq Acc Id: XM_021245838   ⟹   XP_021101497
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,315,206 - 5,332,168 (+)NCBI
RefSeq Acc Id: XM_021245839   ⟹   XP_021101498
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,315,206 - 5,332,168 (+)NCBI
RefSeq Acc Id: XM_021245840   ⟹   XP_021101499
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248325,315,212 - 5,332,168 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021101495 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101496 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101497 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101498 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008992
RefSeq Acc Id: XP_021101496   ⟸   XM_021245837
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021101495   ⟸   XM_021245836
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021101497   ⟸   XM_021245838
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021101498   ⟸   XM_021245839
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021101499   ⟸   XM_021245840
- Peptide Label: isoform X5
Ensembl Acc Id: ENSHGLP00000008991   ⟸   ENSHGLT00000009086
Ensembl Acc Id: ENSHGLP00000008992   ⟸   ENSHGLT00000009087


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006463 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009087 ENTREZGENE
NCBI Gene Lmtk3 ENTREZGENE