Cald1 (caldesmon 1) - Rat Genome Database

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Gene: Cald1 (caldesmon 1) Heterocephalus glaber
Analyze
Symbol: Cald1
Name: caldesmon 1
RGD ID: 18926641
Description: ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); positive regulation of protein binding (ortholog); response to transforming growth factor beta (ortholog); ASSOCIATED WITH Acute Otitis Media (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN actin cap (ortholog); actin filament (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: caldesmon
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476515,357,775 - 15,449,952 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476515,262,032 - 15,452,201 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cald1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476515,357,775 - 15,449,952 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476515,262,032 - 15,452,201 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CALD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387134,745,467 - 134,970,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7134,744,252 - 134,970,729 (+)EnsemblGRCh38hg38GRCh38
GRCh377134,464,385 - 134,655,480 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,114,711 - 134,306,014 (+)NCBINCBI36Build 36hg18NCBI36
Build 347133,921,425 - 134,112,725NCBI
Celera7129,201,597 - 129,392,887 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7128,766,283 - 128,958,067 (+)NCBIHuRef
CHM1_17134,398,049 - 134,589,415 (+)NCBICHM1_1
T2T-CHM13v2.07136,053,098 - 136,278,520 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27133,808,491 - 133,999,799 (+)NCBI
Cald1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39634,575,433 - 34,752,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl634,575,435 - 34,752,408 (+)EnsemblGRCm39 Ensembl
GRCm38634,598,495 - 34,775,469 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl634,598,500 - 34,775,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv37634,659,444 - 34,725,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36634,639,637 - 34,704,252 (+)NCBIMGSCv36mm8
Celera634,709,193 - 34,775,837 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.07NCBI
Cald1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,232,906 - 64,414,085 (+)NCBIGRCr8
mRatBN7.2463,265,781 - 63,446,938 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,265,942 - 63,446,932 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx468,224,218 - 68,404,830 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,139,917 - 64,320,566 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0462,542,329 - 62,722,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,103,948 - 62,291,375 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,220,736 - 62,291,489 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0461,835,972 - 62,022,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4462,087,364 - 62,156,855 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1462,363,493 - 62,432,985 (+)NCBI
Celera458,427,441 - 58,496,854 (+)NCBICelera
RH 3.4 Map4396.8RGD
Cytogenetic Map4q22NCBI
Cald1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554947,578,162 - 7,675,558 (-)NCBIChiLan1.0ChiLan1.0
CALD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26171,600,586 - 171,792,434 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1723,611,018 - 23,802,689 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07126,743,466 - 126,935,412 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17139,249,003 - 139,440,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7139,337,692 - 139,440,643 (+)Ensemblpanpan1.1panPan2
CALD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11613,087,419 - 13,279,648 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1613,084,109 - 13,279,384 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1614,099,621 - 14,291,557 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01613,068,418 - 13,257,206 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1613,068,504 - 13,256,992 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11613,510,057 - 13,701,885 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01612,609,385 - 12,797,864 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01612,748,692 - 12,937,241 (-)NCBIUU_Cfam_GSD_1.0
Cald1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511820,736,003 - 20,913,613 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936579868,500 - 1,046,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936579868,681 - 1,046,198 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1814,267,959 - 14,486,726 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11814,267,955 - 14,486,641 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21815,075,913 - 15,194,572 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121103,435,238 - 103,671,901 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21103,469,975 - 103,672,699 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666072301,159 - 589,710 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017145   ⟹   ENSHGLP00000016974
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476515,357,775 - 15,449,952 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000017146   ⟹   ENSHGLP00000016975
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476515,357,775 - 15,447,530 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000017147   ⟹   ENSHGLP00000016976
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476515,381,193 - 15,449,952 (+)Ensembl
RefSeq Acc Id: XM_004851218   ⟹   XP_004851275
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,262,083 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_004851219   ⟹   XP_004851276
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,262,077 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_013074504   ⟹   XP_012929958
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,262,042 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_013074505   ⟹   XP_012929959
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,262,044 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_013074506   ⟹   XP_012929960
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,262,039 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_013074507   ⟹   XP_012929961
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,381,042 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_013074508   ⟹   XP_012929962
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,262,044 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_021263630   ⟹   XP_021119289
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,317,677 - 15,452,201 (+)NCBI
RefSeq Acc Id: XM_021263631   ⟹   XP_021119290
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476515,262,032 - 15,452,201 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021119290   ⟸   XM_021263631
- Peptide Label: isoform X6
- UniProtKB: G5BS19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929960   ⟸   XM_013074506
- Peptide Label: isoform X3
- UniProtKB: G5BS19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929958   ⟸   XM_013074504
- Peptide Label: isoform X1
- UniProtKB: G5BS19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929959   ⟸   XM_013074505
- Peptide Label: isoform X2
- UniProtKB: G5BS19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929962   ⟸   XM_013074508
- Peptide Label: isoform X5
- UniProtKB: G5BS19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004851276   ⟸   XM_004851219
- Peptide Label: isoform X8
RefSeq Acc Id: XP_004851275   ⟸   XM_004851218
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021119289   ⟸   XM_021263630
- Peptide Label: isoform X1
- UniProtKB: G5BS19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929961   ⟸   XM_013074507
- Peptide Label: isoform X4
- UniProtKB: G5BS19 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016974   ⟸   ENSHGLT00000017145
RefSeq Acc Id: ENSHGLP00000016975   ⟸   ENSHGLT00000017146
RefSeq Acc Id: ENSHGLP00000016976   ⟸   ENSHGLT00000017147


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012139 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017145 ENTREZGENE
  ENSHGLT00000017146 ENTREZGENE
InterPro Caldesmon UniProtKB/TrEMBL
  Caldesmon_LSP UniProtKB/TrEMBL
NCBI Gene Cald1 ENTREZGENE
PANTHER CALDESMON UniProtKB/TrEMBL
  CALDESMON UniProtKB/TrEMBL
Pfam Caldesmon UniProtKB/TrEMBL
PRINTS CALDESMON UniProtKB/TrEMBL
UniProt G5BS19 ENTREZGENE, UniProtKB/TrEMBL