LOC101718508 (cytochrome c, somatic) - Rat Genome Database

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Gene: LOC101718508 (cytochrome c, somatic) Heterocephalus glaber
Analyze
Symbol: LOC101718508 (Ensembl: CYCS)
Name: cytochrome c, somatic
RGD ID: 18926472
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN apoptotic process (ortholog); glial cell apoptotic process (ortholog); hydrogen peroxide metabolic process (ortholog); PARTICIPATES IN cardiolipin metabolic pathway; ceramide signaling pathway; electron transport chain pathway; ASSOCIATED WITH brain ischemia (ortholog); Chloracne (ortholog); cholangiocarcinoma (ortholog); FOUND IN apoptosome (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247395,411,273 - 5,413,995 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247395,411,192 - 5,413,995 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101718508
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247395,411,273 - 5,413,995 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247395,411,192 - 5,413,995 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CYCS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38725,118,656 - 25,125,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl725,118,656 - 25,125,260 (-)EnsemblGRCh38hg38GRCh38
GRCh37725,158,275 - 25,164,879 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36725,124,800 - 25,131,480 (-)NCBINCBI36Build 36hg18NCBI36
Celera725,146,921 - 25,154,374 (-)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef725,044,828 - 25,051,539 (-)NCBIHuRef
CHM1_1725,160,181 - 25,166,894 (-)NCBICHM1_1
T2T-CHM13v2.0725,253,926 - 25,260,530 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2725,209,510 - 25,216,457 (-)NCBI
Cycs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39650,539,543 - 50,543,549 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl650,539,543 - 50,543,518 (-)EnsemblGRCm39 Ensembl
GRCm38650,562,563 - 50,566,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl650,562,563 - 50,566,538 (-)EnsemblGRCm38mm10GRCm38
MGSCv37650,512,562 - 50,516,473 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36650,492,149 - 50,496,060 (-)NCBIMGSCv36mm8
Celera651,079,647 - 51,083,558 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map624.32NCBI
Cycs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8480,982,667 - 80,984,767 (-)NCBIGRCr8
mRatBN7.2479,651,894 - 79,653,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1860,282,810 - 60,284,019 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl479,651,378 - 79,654,054 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx484,869,367 - 84,871,467 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0480,644,890 - 80,646,990 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0479,085,223 - 79,087,323 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0480,331,226 - 80,333,326 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl480,331,227 - 80,333,326 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04145,002,156 - 145,004,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4478,825,878 - 78,827,978 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1479,102,008 - 79,104,108 (-)NCBI
Celera474,558,589 - 74,560,689 (-)NCBICelera
Cytogenetic Map4q24NCBI
LOC102023786
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541027,086,405 - 27,089,255 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541027,086,405 - 27,089,255 (-)NCBIChiLan1.0ChiLan1.0
LOC100986481
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2629,973,124 - 29,977,324 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1778,297,856 - 78,302,051 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0725,784,900 - 25,791,598 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1725,396,013 - 25,398,549 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl725,396,013 - 25,398,549 (-)Ensemblpanpan1.1panPan2
CYCS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11438,579,446 - 38,581,983 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1438,579,446 - 38,581,983 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1438,129,129 - 38,131,665 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01438,516,027 - 38,518,562 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1438,513,097 - 38,518,530 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11438,628,462 - 38,630,996 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01438,321,370 - 38,323,910 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01438,663,988 - 38,666,523 (-)NCBIUU_Cfam_GSD_1.0
CYCS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1847,169,866 - 47,173,866 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11847,169,921 - 47,172,212 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21852,036,068 - 52,038,366 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103226354
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12133,251,825 - 33,253,298 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604271,404,460 - 71,406,988 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000008858   ⟹   ENSHGLP00000008763
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247395,411,273 - 5,413,995 (+)Ensembl
RefSeq Acc Id: XM_004839538   ⟹   XP_004839595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247395,411,192 - 5,413,995 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004839595 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01970 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008763
  ENSHGLP00000014285
  ENSHGLP00100031302
RefSeq Acc Id: XP_004839595   ⟸   XM_004839538
- UniProtKB: G5AY59 (UniProtKB/TrEMBL),   G5ALW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008763   ⟸   ENSHGLT00000008858


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006307 Ensembl, ENTREZGENE
  ENSHGLG00000010213 UniProtKB/TrEMBL
  ENSHGLG00100049145 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008858 ENTREZGENE
  ENSHGLT00000014429 UniProtKB/TrEMBL
  ENSHGLT00100046238 UniProtKB/TrEMBL
Gene3D-CATH 1.10.760.10 UniProtKB/TrEMBL
InterPro Cyt_c-like_dom UniProtKB/TrEMBL
  Cyt_c-like_dom_sf UniProtKB/TrEMBL
  Cyt_c_1A/1B UniProtKB/TrEMBL
KEGG Report hgl:101718508 UniProtKB/TrEMBL
NCBI Gene LOC101718508 ENTREZGENE
PANTHER CYTOCHROME C, SOMATIC UniProtKB/TrEMBL
  PTHR11961 UniProtKB/TrEMBL
Pfam Cytochrom_C UniProtKB/TrEMBL
PRINTS CYTCHRMECIAB UniProtKB/TrEMBL
PROSITE CYTC UniProtKB/TrEMBL
Superfamily-SCOP SSF46626 UniProtKB/TrEMBL
UniProt G5ALW3 ENTREZGENE, UniProtKB/TrEMBL
  G5AY59 ENTREZGENE, UniProtKB/TrEMBL