Vip (vasoactive intestinal peptide) - Rat Genome Database

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Gene: Vip (vasoactive intestinal peptide) Heterocephalus glaber
Analyze
Symbol: Vip
Name: vasoactive intestinal peptide
RGD ID: 18926219
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response (ortholog); learning or memory (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); alcohol use disorder (ortholog); Animal Hepatitis (ortholog); FOUND IN neuron projection terminus (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: VIP peptide; VIP peptides; VIP peptides isoform 1 preproprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247855,468,563 - 5,488,143 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247855,466,429 - 5,487,763 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247855,468,563 - 5,488,143 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247855,466,429 - 5,487,763 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
VIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386152,750,797 - 152,759,760 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6152,750,797 - 152,759,765 (+)EnsemblGRCh38hg38GRCh38
GRCh376153,071,932 - 153,080,895 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366153,113,626 - 153,122,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 346153,164,046 - 153,173,012NCBI
Celera6153,805,638 - 153,814,605 (+)NCBICelera
Cytogenetic Map6q25.2NCBI
HuRef6150,635,051 - 150,644,019 (+)NCBIHuRef
CHM1_16153,335,885 - 153,344,853 (+)NCBICHM1_1
T2T-CHM13v2.06153,952,118 - 153,961,081 (+)NCBIT2T-CHM13v2.0
Vip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39105,589,131 - 5,597,617 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl105,589,218 - 5,597,617 (+)EnsemblGRCm39 Ensembl
GRCm38105,639,193 - 5,647,617 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl105,639,218 - 5,647,617 (+)EnsemblGRCm38mm10GRCm38
MGSCv37104,698,927 - 4,707,323 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36104,698,927 - 4,707,323 (-)NCBIMGSCv36mm8
Celera105,575,276 - 5,583,675 (+)NCBICelera
Cytogenetic Map10A1NCBI
cM Map101.97NCBI
Vip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8144,470,232 - 44,478,561 (+)NCBIGRCr8
mRatBN7.2142,064,878 - 42,073,219 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,065,120 - 42,073,216 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,603,576 - 42,611,659 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0148,590,772 - 48,598,855 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0142,679,038 - 42,687,121 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,169,307 - 42,177,582 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,169,501 - 42,177,582 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,498,288 - 43,506,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4136,361,513 - 36,369,594 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1136,365,863 - 36,372,520 (+)NCBI
Celera137,742,285 - 37,750,366 (+)NCBICelera
Cytogenetic Map1q11NCBI
Vip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554399,021,904 - 9,031,792 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554399,021,923 - 9,031,783 (-)NCBIChiLan1.0ChiLan1.0
VIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25172,771,030 - 172,780,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16170,663,855 - 170,672,872 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06150,564,545 - 150,573,582 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16155,236,848 - 155,263,730 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6155,254,652 - 155,263,730 (+)Ensemblpanpan1.1panPan2
VIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,941,655 - 42,950,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl142,941,224 - 42,950,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha143,780,582 - 43,789,690 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,121,172 - 43,130,243 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,121,202 - 43,130,243 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1142,993,230 - 43,002,341 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0142,856,855 - 42,865,968 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0143,344,732 - 43,353,814 (+)NCBIUU_Cfam_GSD_1.0
Vip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,173,756 - 138,182,789 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364895,425,726 - 5,434,785 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364895,425,778 - 5,434,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,611,311 - 13,620,269 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,611,786 - 13,620,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,890,605 - 15,896,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11380,217,602 - 80,228,320 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1380,218,572 - 80,228,278 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604052,548,641 - 52,557,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005211   ⟹   ENSHGLP00000005144
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247855,468,563 - 5,488,143 (-)Ensembl
RefSeq Acc Id: XM_004856861   ⟹   XP_004856918
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247855,466,429 - 5,487,763 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856918 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11439 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005144
  ENSHGLP00100024203
GenBank Protein JAN96432 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004856918   ⟸   XM_004856861
- UniProtKB: G5BQ71 (UniProtKB/TrEMBL),   A0A0P6IXQ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000005144   ⟸   ENSHGLT00000005211


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003764 Ensembl, ENTREZGENE
  ENSHGLG00100017770 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005211 ENTREZGENE
  ENSHGLT00100024449 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.590 UniProtKB/TrEMBL
InterPro Glucagon_GIP_secretin_VIP UniProtKB/TrEMBL
  VIP/GHRH-like UniProtKB/TrEMBL
KEGG Report hgl:101713745 UniProtKB/TrEMBL
NCBI Gene Vip ENTREZGENE
PANTHER PTHR11213 UniProtKB/TrEMBL
  PTHR11213:SF5 UniProtKB/TrEMBL
Pfam Hormone_2 UniProtKB/TrEMBL
PROSITE GLUCAGON UniProtKB/TrEMBL
SMART GLUCA UniProtKB/TrEMBL
UniProt A0A0P6IXQ4 ENTREZGENE, UniProtKB/TrEMBL
  G5BQ71 ENTREZGENE, UniProtKB/TrEMBL