Fam20a (FAM20A golgi associated secretory pathway pseudokinase) - Rat Genome Database

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Pathways
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Gene: Fam20a (FAM20A golgi associated secretory pathway pseudokinase) Heterocephalus glaber
Analyze
Symbol: Fam20a
Name: FAM20A golgi associated secretory pathway pseudokinase
RGD ID: 18926146
Description: ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN biomineral tissue development (ortholog); calcium ion homeostasis (ortholog); enamel mineralization (ortholog); ASSOCIATED WITH acrodysostosis (ortholog); amelogenesis imperfecta type 1G (ortholog); Carney complex (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pseudokinase FAM20A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248703,577,386 - 3,632,967 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248703,576,995 - 3,632,964 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam20a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248703,577,386 - 3,632,967 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248703,576,995 - 3,632,964 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FAM20A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381768,535,116 - 68,601,367 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1768,535,113 - 68,601,367 (-)EnsemblGRCh38hg38GRCh38
GRCh371766,531,257 - 66,597,508 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361764,044,860 - 64,108,690 (-)NCBINCBI36Build 36hg18NCBI36
Build 341764,044,859 - 64,108,690NCBI
Celera1763,103,046 - 63,168,874 (-)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1761,916,991 - 61,982,775 (-)NCBIHuRef
CHM1_11766,596,013 - 66,662,169 (-)NCBICHM1_1
T2T-CHM13v2.01769,411,970 - 69,478,232 (-)NCBIT2T-CHM13v2.0
Fam20a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911109,563,752 - 109,613,989 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11109,560,575 - 109,613,105 (-)EnsemblGRCm39 Ensembl
GRCm3811109,669,746 - 109,723,163 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11109,669,749 - 109,722,279 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711109,534,240 - 109,583,570 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611109,489,016 - 109,538,346 (-)NCBIMGSCv36mm8
Celera11121,411,437 - 121,460,788 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1172.37NCBI
Fam20a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81095,136,799 - 95,197,176 (-)NCBIGRCr8
mRatBN7.21094,638,836 - 94,697,814 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1094,642,850 - 94,697,672 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1099,700,773 - 99,754,553 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01099,163,851 - 99,217,638 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01094,573,768 - 94,627,735 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01097,962,467 - 98,017,171 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1097,962,693 - 98,018,014 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01097,676,935 - 97,731,346 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41099,113,846 - 99,170,601 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11099,128,215 - 99,184,971 (-)NCBI
Celera1093,301,687 - 93,354,956 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Fam20a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554784,182,568 - 4,236,819 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554784,182,568 - 4,236,819 (+)NCBIChiLan1.0ChiLan1.0
FAM20A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21984,565,750 - 84,629,761 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,382,665 - 89,450,156 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01762,474,317 - 62,537,800 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11767,863,696 - 67,927,152 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1767,864,331 - 67,927,128 (-)Ensemblpanpan1.1panPan2
FAM20A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1915,205,887 - 15,218,873 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl915,207,300 - 15,230,447 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha916,099,687 - 16,148,637 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0916,869,162 - 16,918,170 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl916,869,235 - 16,918,839 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1915,814,064 - 15,862,997 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,670,022 - 11,719,172 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,670,116 - 11,719,124 (+)NCBIUU_Cfam_GSD_1.0
Fam20a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560211,279,020 - 11,326,742 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365417,867,303 - 7,916,154 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365417,867,856 - 7,916,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM20A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1211,607,034 - 11,657,737 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11211,606,469 - 11,663,086 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,098,062 - 12,124,101 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM20A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11652,955,411 - 53,017,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1652,955,714 - 53,016,909 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607723,883,015 - 23,945,225 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004870287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01095610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000003150   ⟹   ENSHGLP00000003095
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248703,577,386 - 3,632,967 (-)Ensembl
RefSeq Acc Id: XM_004870287   ⟹   XP_004870344
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248703,576,995 - 3,632,964 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004870344 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003095
Reference Protein Sequences
RefSeq Acc Id: XP_004870344   ⟸   XM_004870287
- UniProtKB: G5BLR8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003095   ⟸   ENSHGLT00000003150


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002315 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003150 ENTREZGENE
InterPro FAM20 UniProtKB/TrEMBL
  FAM20_C UniProtKB/TrEMBL
NCBI Gene Fam20a ENTREZGENE
PANTHER DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 UniProtKB/TrEMBL
  PSEUDOKINASE FAM20A UniProtKB/TrEMBL
Pfam Fam20C UniProtKB/TrEMBL
UniProt G5BLR8 ENTREZGENE, UniProtKB/TrEMBL