Ifrd2 (interferon related developmental regulator 2) - Rat Genome Database

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Gene: Ifrd2 (interferon related developmental regulator 2) Heterocephalus glaber
Analyze
Symbol: Ifrd2
Name: interferon related developmental regulator 2
RGD ID: 18926111
Description: ENCODES a protein that exhibits ribosome binding (ortholog); translation repressor activity (ortholog); INVOLVED IN negative regulation of translation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interferon-related developmental regulator 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247304,148,888 - 4,154,496 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247304,148,888 - 4,154,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
Ifrd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247304,148,888 - 4,154,496 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247304,148,888 - 4,154,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IFRD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38350,287,732 - 50,292,429 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl350,287,732 - 50,292,918 (-)EnsemblGRCh38hg38GRCh38
GRCh37350,325,163 - 50,329,860 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,300,124 - 50,304,923 (-)NCBINCBI36Build 36hg18NCBI36
Build 34350,300,123 - 50,304,923NCBI
Celera350,297,995 - 50,302,857 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,380,906 - 50,385,769 (-)NCBIHuRef
CHM1_1350,277,469 - 50,282,332 (-)NCBICHM1_1
T2T-CHM13v2.0350,317,089 - 50,321,785 (-)NCBIT2T-CHM13v2.0
Ifrd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,464,917 - 107,470,237 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,464,841 - 107,470,584 (+)EnsemblGRCm39 Ensembl
GRCm389107,587,718 - 107,593,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,587,642 - 107,593,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,490,049 - 107,495,369 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,445,819 - 107,451,139 (+)NCBIMGSCv36mm8
Celera9107,196,492 - 107,201,819 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.24NCBI
Ifrd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,139,612 - 117,144,834 (+)NCBIGRCr8
mRatBN7.28108,260,969 - 108,266,191 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,260,969 - 108,266,194 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8113,887,789 - 113,893,023 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,086,946 - 112,092,180 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,929,728 - 109,934,962 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,343,096 - 116,348,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,343,096 - 116,348,314 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,699,356 - 115,704,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,834,734 - 112,839,956 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18112,854,188 - 112,859,131 (+)NCBI
Celera8107,567,547 - 107,572,769 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ifrd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,101,202 - 2,104,104 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,101,202 - 2,106,779 (-)NCBIChiLan1.0ChiLan1.0
IFRD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2250,270,799 - 50,276,030 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1350,275,574 - 50,280,436 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0350,216,335 - 50,221,186 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,451,086 - 51,455,934 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,451,086 - 51,455,934 (-)Ensemblpanpan1.1panPan2
IFRD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,047,573 - 39,053,528 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,048,259 - 39,053,341 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2038,968,620 - 38,974,571 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,403,618 - 39,409,570 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,397,514 - 39,409,548 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12038,771,441 - 38,777,392 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,174,952 - 39,180,903 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,455,021 - 39,460,972 (+)NCBIUU_Cfam_GSD_1.0
Ifrd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560265,064,610 - 65,070,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,823,679 - 1,830,879 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,825,107 - 1,831,112 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFRD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,756,680 - 32,790,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,756,671 - 32,790,763 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,935,219 - 35,969,079 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFRD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,675,094 - 11,679,953 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,675,542 - 11,679,843 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,306,236 - 155,311,096 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017877   ⟹   ENSHGLP00000017702
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247304,148,888 - 4,154,496 (-)Ensembl
RefSeq Acc Id: XM_004834094   ⟹   XP_004834151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,148,888 - 4,154,698 (-)NCBI
RefSeq Acc Id: XM_004834095   ⟹   XP_004834152
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,148,888 - 4,154,698 (-)NCBI
RefSeq Acc Id: XM_021236527   ⟹   XP_021092186
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,148,888 - 4,154,540 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834151 (Get FASTA)   NCBI Sequence Viewer  
  XP_004834152 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092186 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017702
Reference Protein Sequences
RefSeq Acc Id: XP_004834152   ⟸   XM_004834095
- Peptide Label: isoform X2
- UniProtKB: G5BZY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834151   ⟸   XM_004834094
- Peptide Label: isoform X1
- UniProtKB: G5BZY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092186   ⟸   XM_021236527
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000017702   ⟸   ENSHGLT00000017877


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012660 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017877 ENTREZGENE
Gene3D-CATH Leucine-rich Repeat Variant UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  IFRD UniProtKB/TrEMBL
  Interferon-rel_develop_reg_C UniProtKB/TrEMBL
  Interferon-rel_develop_reg_N UniProtKB/TrEMBL
NCBI Gene Ifrd2 ENTREZGENE
PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR UniProtKB/TrEMBL
  INTERFERON-RELATED DEVELOPMENTAL REGULATOR 2 UniProtKB/TrEMBL
Pfam IFRD UniProtKB/TrEMBL
  IFRD_C UniProtKB/TrEMBL
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL
UniProt G5BZY9 ENTREZGENE, UniProtKB/TrEMBL