Tamm41 (TAM41 mitochondrial translocator assembly and maintenance homolog) - Rat Genome Database

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Gene: Tamm41 (TAM41 mitochondrial translocator assembly and maintenance homolog) Heterocephalus glaber
Analyze
Symbol: Tamm41
Name: TAM41 mitochondrial translocator assembly and maintenance homolog
RGD ID: 18925963
Description: ENCODES a protein that exhibits nucleotidyltransferase activity (inferred); phosphatidate cytidylyltransferase activity (inferred); INVOLVED IN cardiolipin biosynthetic process (inferred); CDP-diacylglycerol biosynthetic process (inferred); phospholipid biosynthetic process (inferred); PARTICIPATES IN cardiolipin biosynthetic pathway; ASSOCIATED WITH combined oxidative phosphorylation deficiency (ortholog); combined oxidative phosphorylation deficiency 56 (ortholog); Deglutition Disorders (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial translocator assembly and maintenance protein 41 homolog; phosphatidate cytidylyltransferase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462494326,409 - 72,206 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462494326,241 - 88,233 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tamm41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462494326,409 - 72,206 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462494326,241 - 88,233 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAMM41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38311,721,896 - 11,846,885 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl311,790,442 - 11,846,919 (-)EnsemblGRCh38hg38GRCh38
GRCh37311,831,916 - 11,888,359 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36311,806,919 - 11,863,352 (-)NCBINCBI36Build 36hg18NCBI36
Celera311,767,171 - 11,823,599 (-)NCBICelera
Cytogenetic Map3p25.2NCBI
HuRef311,765,083 - 11,821,439 (-)NCBIHuRef
CHM1_1311,781,947 - 11,838,914 (-)NCBICHM1_1
T2T-CHM13v2.0311,717,623 - 11,842,634 (-)NCBIT2T-CHM13v2.0
Tamm41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396114,981,342 - 115,014,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6114,981,342 - 115,014,837 (-)EnsemblGRCm39 Ensembl
GRCm386115,004,381 - 115,037,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,004,381 - 115,037,876 (-)EnsemblGRCm38mm10GRCm38
MGSCv376114,954,399 - 114,987,892 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366114,970,000 - 115,003,493 (-)NCBIMGSCv36mm8
Celera6116,842,297 - 116,875,811 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.14NCBI
Tamm41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84149,743,216 - 149,776,388 (-)NCBIGRCr8
mRatBN7.24148,070,388 - 148,103,728 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,018,463 - 148,103,694 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4154,296,081 - 154,328,796 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,079,140 - 150,111,859 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04148,702,961 - 148,735,676 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04146,922,085 - 146,954,159 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4146,922,085 - 146,954,159 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04210,211,579 - 210,243,653 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44151,138,678 - 151,171,829 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4136,965,822 - 136,998,658 (-)NCBICelera
Cytogenetic Map4q42NCBI
Tamm41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542914,452,531 - 14,500,287 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542914,452,473 - 14,500,441 (-)NCBIChiLan1.0ChiLan1.0
TAMM41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,716,003 - 11,840,782 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1311,720,132 - 11,845,534 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0311,655,271 - 11,780,497 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1312,068,067 - 12,124,535 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl312,068,067 - 12,124,535 (-)Ensemblpanpan1.1panPan2
TAMM41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1206,650,347 - 6,703,407 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl206,653,026 - 6,709,922 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha206,689,071 - 6,739,976 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0206,679,865 - 6,732,435 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl206,682,547 - 6,732,426 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1206,400,911 - 6,450,672 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0206,755,799 - 6,807,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0206,727,103 - 6,776,945 (+)NCBIUU_Cfam_GSD_1.0
Tamm41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494217,178,646 - 17,214,847 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366021,694,881 - 1,726,616 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAMM41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1367,922,480 - 67,983,526 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11367,922,476 - 67,983,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21375,136,048 - 75,197,048 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAMM41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12247,798,325 - 47,855,262 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2247,798,290 - 47,854,946 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041118,660,310 - 118,729,849 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000003258   ⟹   ENSHGLP00000003203
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462494326,409 - 72,206 (+)Ensembl
RefSeq Acc Id: XM_004874833   ⟹   XP_004874890
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,246 - 72,317 (+)NCBI
RefSeq Acc Id: XM_004874834   ⟹   XP_004874891
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,246 - 80,577 (+)NCBI
RefSeq Acc Id: XM_013069298   ⟹   XP_012924752
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,243 - 80,577 (+)NCBI
RefSeq Acc Id: XM_013069299   ⟹   XP_012924753
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,246 - 72,123 (+)NCBI
RefSeq Acc Id: XM_021252202   ⟹   XP_021107861
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,242 - 80,577 (+)NCBI
RefSeq Acc Id: XM_021252203   ⟹   XP_021107862
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,243 - 88,233 (+)NCBI
RefSeq Acc Id: XM_021252204   ⟹   XP_021107863
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,241 - 80,577 (+)NCBI
RefSeq Acc Id: XM_021252205   ⟹   XP_021107864
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,242 - 80,577 (+)NCBI
RefSeq Acc Id: XM_021252206   ⟹   XP_021107865
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,241 - 80,577 (+)NCBI
RefSeq Acc Id: XM_021252207   ⟹   XP_021107866
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,246 - 72,297 (+)NCBI
RefSeq Acc Id: XM_021252208   ⟹   XP_021107867
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,244 - 72,317 (+)NCBI
RefSeq Acc Id: XM_021252209   ⟹   XP_021107868
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,242 - 87,169 (+)NCBI
RefSeq Acc Id: XR_001182924
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462494326,243 - 80,577 (+)NCBI
RefSeq Acc Id: XP_021107863   ⟸   XM_021252204
- Peptide Label: isoform X4
- UniProtKB: A0AAX6SJ18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107865   ⟸   XM_021252206
- Peptide Label: isoform X6
- UniProtKB: A0AAX6SFE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107868   ⟸   XM_021252209
- Peptide Label: isoform X12
- UniProtKB: A0AAX6SGA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107861   ⟸   XM_021252202
- Peptide Label: isoform X2
- UniProtKB: A0AAX6SEK8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107864   ⟸   XM_021252205
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SH14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107862   ⟸   XM_021252203
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SCT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924752   ⟸   XM_013069298
- Peptide Label: isoform X1
- UniProtKB: A0AAX6QRR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107867   ⟸   XM_021252208
- Peptide Label: isoform X11
- UniProtKB: A0AAX6SG41 (UniProtKB/TrEMBL),   G5C222 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004874891   ⟸   XM_004874834
- Peptide Label: isoform X8
- UniProtKB: A0AAX6QJA0 (UniProtKB/TrEMBL),   G5C222 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004874890   ⟸   XM_004874833
- Peptide Label: isoform X7
- UniProtKB: A0AAX6QJB4 (UniProtKB/TrEMBL),   G5C222 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107866   ⟸   XM_021252207
- Peptide Label: isoform X9
- UniProtKB: A0AAX6SEM4 (UniProtKB/TrEMBL),   G5C222 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012924753   ⟸   XM_013069299
- Peptide Label: isoform X10
- UniProtKB: A0AAX6QSW3 (UniProtKB/TrEMBL),   G5C222 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003203   ⟸   ENSHGLT00000003258


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002380 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003258 ENTREZGENE
InterPro Tam41 UniProtKB/TrEMBL
NCBI Gene Tamm41 ENTREZGENE
PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE, MITOCHONDRIAL UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Tam41_Mmp37 UniProtKB/TrEMBL
PIRSF Mmp37 UniProtKB/TrEMBL
UniProt A0AAX6QJA0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QJB4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QRR0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QSW3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SCT1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SEK8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SEM4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SFE5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SG41 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SGA1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SH14 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SJ18 ENTREZGENE, UniProtKB/TrEMBL
  G5C222 ENTREZGENE, UniProtKB/TrEMBL