Znf280b (zinc finger protein 280B) - Rat Genome Database

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Gene: Znf280b (zinc finger protein 280B) Heterocephalus glaber
Analyze
Symbol: Znf280b
Name: zinc finger protein 280B
RGD ID: 18925839
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247478,819,889 - 8,821,529 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247478,816,707 - 8,835,136 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Znf280b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247478,819,889 - 8,821,529 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247478,816,707 - 8,835,136 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF280B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,484,421 - 22,509,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,484,421 - 22,508,742 (-)EnsemblGRCh38hg38GRCh38
GRCh372222,838,767 - 22,863,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362221,168,767 - 21,193,505 (-)NCBINCBI36Build 36hg18NCBI36
Build 342221,163,322 - 21,188,059NCBI
Celera226,646,667 - 6,671,408 (-)NCBICelera
Cytogenetic Map22q11.22NCBI
HuRef225,797,402 - 5,822,126 (-)NCBIHuRef
CHM1_12222,838,891 - 22,863,657 (-)NCBICHM1_1
T2T-CHM13v2.02222,907,263 - 22,932,010 (-)NCBIT2T-CHM13v2.0
Zfp280b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,868,235 - 75,878,804 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1075,868,484 - 75,879,068 (+)EnsemblGRCm39 Ensembl
GRCm381076,032,401 - 76,042,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,032,650 - 76,043,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,495,357 - 75,505,714 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,476,430 - 75,486,679 (+)NCBIMGSCv36mm8
Celera1077,076,547 - 77,086,900 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.67NCBI
Zfp280b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,626,550 - 12,641,383 (-)NCBIGRCr8
mRatBN7.22012,627,106 - 12,641,943 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,627,106 - 12,646,683 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2013,326,059 - 13,340,942 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,686,990 - 12,701,873 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02013,158,777 - 13,173,659 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,566,381 - 13,581,215 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,567,803 - 13,581,164 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,635,322 - 15,650,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42013,025,644 - 13,040,457 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2014,118,484 - 14,133,290 (-)NCBICelera
Cytogenetic Map20p12NCBI
Znf280b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554556,866,762 - 6,868,411 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554556,866,576 - 6,888,907 (-)NCBIChiLan1.0ChiLan1.0
ZNF280B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22332,171,164 - 32,193,625 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12235,828,987 - 35,857,502 (+)NCBINHGRI_mPanPan1
ZNF280B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12627,074,293 - 27,094,898 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2627,074,456 - 27,076,087 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2626,215,218 - 26,236,518 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02628,549,480 - 28,570,784 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2628,546,569 - 28,570,760 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12626,597,080 - 26,618,379 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02626,065,065 - 26,086,414 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02627,225,649 - 27,246,957 (-)NCBIUU_Cfam_GSD_1.0
Znf280b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118120,358,965 - 120,429,737 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936874600,210 - 601,847 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936874597,268 - 619,809 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110256677
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11448,882,955 - 48,888,138 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF280B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1193,468,032 - 3,491,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl193,484,232 - 3,485,863 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660853,609,262 - 3,631,133 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000028678   ⟹   ENSHGLP00000028251
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247478,819,889 - 8,821,529 (-)Ensembl
RefSeq Acc Id: XM_004843525   ⟹   XP_004843582
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247478,816,707 - 8,835,136 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843582 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06778 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028251
Reference Protein Sequences
RefSeq Acc Id: XP_004843582   ⟸   XM_004843525
- UniProtKB: G5BBW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000028251   ⟸   ENSHGLT00000028678


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020468 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000028678 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro DUF4195 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf280b ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 280B UniProtKB/TrEMBL
Pfam DUF4195 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt G5BBW7 ENTREZGENE, UniProtKB/TrEMBL