Rab35 (RAB35, member RAS oncogene family) - Rat Genome Database

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Gene: Rab35 (RAB35, member RAS oncogene family) Heterocephalus glaber
Analyze
Symbol: Rab35
Name: RAB35, member RAS oncogene family
RGD ID: 18925715
Description: ENCODES a protein that exhibits GDP binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to nerve growth factor stimulus (ortholog); endosomal transport (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN cell projection membrane (ortholog); clathrin-coated endocytic vesicle (ortholog); clathrin-coated pit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-35
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,520,254 - 13,537,651 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,520,228 - 13,538,664 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rab35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474713,520,254 - 13,537,651 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474713,520,228 - 13,538,664 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAB35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812120,095,099 - 120,116,753 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12120,095,099 - 120,117,502 (-)EnsemblGRCh38hg38GRCh38
GRCh3712120,532,903 - 120,554,557 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,017,286 - 119,038,982 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412118,995,625 - 119,017,319NCBI
Celera12120,166,012 - 120,187,759 (-)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12117,542,010 - 117,563,709 (-)NCBIHuRef
CHM1_112120,500,857 - 120,522,609 (-)NCBICHM1_1
T2T-CHM13v2.012120,082,260 - 120,103,928 (-)NCBIT2T-CHM13v2.0
Rab35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,769,953 - 115,785,217 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5115,769,967 - 115,785,795 (+)EnsemblGRCm39 Ensembl
GRCm385115,631,904 - 115,647,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,631,908 - 115,647,736 (+)EnsemblGRCm38mm10GRCm38
MGSCv375116,081,996 - 116,097,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365115,892,986 - 115,908,157 (+)NCBIMGSCv36mm8
Celera5112,733,510 - 112,748,639 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.1NCBI
Rab35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81246,627,302 - 46,642,815 (-)NCBIGRCr8
mRatBN7.21240,967,102 - 40,981,183 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,967,103 - 40,991,195 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1242,134,273 - 42,148,364 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01242,747,919 - 42,762,012 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01241,808,458 - 41,822,551 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01246,704,274 - 46,718,404 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,704,275 - 46,718,355 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,502,883 - 48,516,964 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,228,638 - 42,242,719 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,092,026 - 42,106,107 (-)NCBI
Celera1242,590,110 - 42,604,191 (-)NCBICelera
Cytogenetic Map12q16NCBI
Rab35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545511,484,557 - 11,502,630 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545511,484,557 - 11,502,630 (+)NCBIChiLan1.0ChiLan1.0
RAB35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210128,157,410 - 128,181,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112128,153,783 - 128,175,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012117,670,693 - 117,692,322 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112121,046,536 - 121,068,152 (-)NCBIpanpan1.1PanPan1.1panPan2
RAB35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,061,872 - 16,078,489 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2616,063,043 - 16,078,481 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,066,489 - 16,083,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02616,329,134 - 16,346,157 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2616,329,144 - 16,346,137 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12616,290,210 - 16,307,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02616,367,606 - 16,384,611 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02616,408,625 - 16,425,638 (-)NCBIUU_Cfam_GSD_1.0
Rab35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118146,296,588 - 146,313,298 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936668800,854 - 810,128 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936668795,477 - 812,187 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1440,124,326 - 40,141,668 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11440,124,318 - 40,141,261 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,686,678 - 42,703,619 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,447,483 - 115,468,964 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11115,447,489 - 115,468,941 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037129,638,557 - 129,660,232 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013071737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01026903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000017935   ⟹   ENSHGLP00000017760
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474713,520,254 - 13,537,651 (+)Ensembl
RefSeq Acc Id: XM_013071737   ⟹   XP_012927191
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474713,520,228 - 13,538,664 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012927191 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017760
RefSeq Acc Id: XP_012927191   ⟸   XM_013071737
- UniProtKB: G5B784 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000017760   ⟸   ENSHGLT00000017935


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012703 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017935 ENTREZGENE
Gene3D-CATH P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene Rab35 ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-35 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt A0AAX6QWZ5_HETGA UniProtKB/TrEMBL
  G5B784 ENTREZGENE, UniProtKB/TrEMBL