Ca4 (carbonic anhydrase 4) - Rat Genome Database

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Gene: Ca4 (carbonic anhydrase 4) Heterocephalus glaber
Analyze
Symbol: Ca4
Name: carbonic anhydrase 4
RGD ID: 18925612
Description: ENCODES a protein that exhibits carbonate dehydratase activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); response to steroid hormone (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248713,461,052 - 3,469,838 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248713,462,577 - 3,469,978 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ca4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248713,461,052 - 3,469,838 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248713,462,577 - 3,469,978 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381760,149,973 - 60,179,021 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1760,149,942 - 60,170,899 (+)EnsemblGRCh38hg38GRCh38
GRCh371758,227,334 - 58,256,382 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361755,582,131 - 55,591,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 341755,582,130 - 55,591,686NCBI
Celera1754,687,198 - 54,696,791 (+)NCBICelera
Cytogenetic Map17q23.1NCBI
HuRef1753,598,240 - 53,607,844 (+)NCBIHuRef
CHM1_11758,291,334 - 58,300,936 (+)NCBICHM1_1
T2T-CHM13v2.01761,018,933 - 61,047,969 (+)NCBIT2T-CHM13v2.0
Car4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,848,580 - 84,856,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,848,612 - 84,856,870 (+)EnsemblGRCm39 Ensembl
GRCm381184,957,754 - 84,966,054 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,957,786 - 84,966,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv371184,771,256 - 84,779,556 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,774,038 - 84,782,239 (+)NCBIMGSCv36mm8
Celera1194,577,982 - 94,586,281 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.34NCBI
Car4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81070,325,102 - 70,333,916 (+)NCBIGRCr8
mRatBN7.21069,827,945 - 69,836,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1069,827,945 - 69,836,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1074,447,929 - 74,456,487 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,952,696 - 73,961,254 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01069,417,368 - 69,425,928 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01072,272,286 - 72,281,069 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1072,272,248 - 72,281,067 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01072,173,022 - 72,188,138 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41073,229,211 - 73,237,707 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11073,243,580 - 73,252,077 (+)NCBI
Celera1068,755,736 - 68,764,294 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ca4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554511,486,010 - 1,494,084 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554511,485,939 - 1,493,249 (+)NCBIChiLan1.0ChiLan1.0
CA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21976,333,203 - 76,361,305 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11781,143,962 - 81,166,490 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01754,236,114 - 54,258,638 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1936,327,919 - 36,337,103 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl936,327,969 - 36,337,088 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha935,555,114 - 35,563,663 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0937,140,849 - 37,149,372 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl937,140,894 - 37,150,309 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1935,919,574 - 35,928,095 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0936,206,744 - 36,215,265 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0936,294,940 - 36,303,505 (-)NCBIUU_Cfam_GSD_1.0
Ca4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560235,301,294 - 35,310,173 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364901,764,795 - 1,774,645 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364901,764,845 - 1,773,752 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1237,962,943 - 37,972,509 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11237,962,951 - 37,972,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21239,632,792 - 39,642,290 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11631,369,238 - 31,379,366 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660772,113,971 - 2,123,779 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000014578   ⟹   ENSHGLP00000014433
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248713,461,052 - 3,469,838 (-)Ensembl
RefSeq Acc Id: XM_004870393   ⟹   XP_004870450
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248713,462,577 - 3,469,978 (-)NCBI
RefSeq Acc Id: XM_021248773   ⟹   XP_021104432
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248713,462,694 - 3,469,900 (-)NCBI
RefSeq Acc Id: XM_021248774   ⟹   XP_021104433
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248713,462,694 - 3,469,295 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004870450 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104432 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104433 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01582 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014433
  ENSHGLP00100042245
RefSeq Acc Id: XP_004870450   ⟸   XM_004870393
- Peptide Label: isoform X1
- UniProtKB: G5AX21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104432   ⟸   XM_021248773
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021104433   ⟸   XM_021248774
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000014433   ⟸   ENSHGLT00000014578


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010334 Ensembl, ENTREZGENE
  ENSHGLG00100005928 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014578 ENTREZGENE
  ENSHGLT00100074629 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/TrEMBL
KEGG Report hgl:101700918 UniProtKB/TrEMBL
NCBI Gene Ca4 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF95 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_1 UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt G5AX21 ENTREZGENE, UniProtKB/TrEMBL