Arpin (actin related protein 2/3 complex inhibitor) - Rat Genome Database

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Gene: Arpin (actin related protein 2/3 complex inhibitor) Heterocephalus glaber
Analyze
Symbol: Arpin
Name: actin related protein 2/3 complex inhibitor
RGD ID: 18925580
Description: INVOLVED IN directional locomotion (ortholog); negative regulation of cell migration (ortholog); negative regulation of lamellipodium morphogenesis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UPF0552 protein C15orf38
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,952,247 - 16,964,384 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,956,263 - 16,964,328 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arpin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,952,247 - 16,964,384 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,956,263 - 16,964,328 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARPIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,895,006 - 89,912,952 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,895,006 - 89,912,952 (-)EnsemblGRCh38hg38GRCh38
GRCh371590,438,238 - 90,456,184 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361588,244,836 - 88,257,163 (-)NCBINCBI36Build 36hg18NCBI36
Celera1566,846,848 - 66,859,238 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,555,730 - 66,567,933 (-)NCBIHuRef
CHM1_11590,285,571 - 90,297,960 (-)NCBICHM1_1
T2T-CHM13v2.01587,651,017 - 87,668,969 (-)NCBIT2T-CHM13v2.0
Arpin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,575,107 - 79,585,012 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,575,109 - 79,585,107 (-)EnsemblGRCm39 Ensembl
GRCm38779,925,359 - 79,935,264 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,925,361 - 79,935,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv37787,070,245 - 87,080,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36779,798,872 - 79,808,777 (-)NCBIMGSCv36mm8
Celera777,324,243 - 77,334,140 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.27NCBI
Arpin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,273,590 - 143,282,426 (-)NCBIGRCr8
mRatBN7.21133,864,288 - 133,873,124 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,864,265 - 133,873,124 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,773,839 - 141,782,670 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01148,943,246 - 148,952,077 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01141,860,963 - 141,869,790 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01141,664,790 - 141,672,789 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,662,850 - 141,672,810 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,623,523 - 142,632,040 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,695,647 - 135,704,728 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,731,508 - 135,792,948 (-)NCBI
Celera1125,926,444 - 125,935,382 (-)NCBICelera
Cytogenetic Map1q31NCBI
ARPIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,441,939 - 79,458,378 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11583,142,853 - 83,160,714 (-)NCBINHGRI_mPanPan1
ARPIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,870,775 - 52,880,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,870,822 - 52,881,098 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,503,715 - 55,513,632 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,286,570 - 53,296,562 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,285,293 - 53,296,918 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,808,253 - 52,818,159 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,018,525 - 53,028,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,358,741 - 53,368,651 (-)NCBIUU_Cfam_GSD_1.0
LOC101973699
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,651,732 - 130,669,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,664,856 - 15,682,834 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,664,972 - 15,682,795 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,468,568 - 55,483,536 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,469,015 - 55,483,632 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,353,276 - 60,367,560 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014657   ⟹   ENSHGLP00000014512
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476816,952,247 - 16,964,384 (-)Ensembl
RefSeq Acc Id: XM_013075106   ⟹   XP_012930560
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476816,956,263 - 16,964,328 (-)NCBI
RefSeq Acc Id: XM_013075107   ⟹   XP_012930561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476816,956,263 - 16,964,328 (-)NCBI
RefSeq Acc Id: XM_013075108   ⟹   XP_012930562
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476816,956,263 - 16,964,327 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012930560 (Get FASTA)   NCBI Sequence Viewer  
  XP_012930561 (Get FASTA)   NCBI Sequence Viewer  
  XP_012930562 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014512
GenBank Protein JAN98924 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012930561   ⟸   XM_013075107
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012930560   ⟸   XM_013075106
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J5W5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012930562   ⟸   XM_013075108
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000014512   ⟸   ENSHGLT00000014657


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010393 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014657 ENTREZGENE
InterPro Arpin UniProtKB/TrEMBL
KEGG Report hgl:106007620 UniProtKB/TrEMBL
NCBI Gene Arpin ENTREZGENE
PANTHER ARPIN UniProtKB/TrEMBL
  PTHR31199 UniProtKB/TrEMBL
Pfam UPF0552 UniProtKB/TrEMBL
UniProt A0A0P6J5W5 ENTREZGENE, UniProtKB/TrEMBL