Gnptab (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta) - Rat Genome Database

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Gene: Gnptab (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta) Heterocephalus glaber
Analyze
Symbol: Gnptab
Name: N-acetylglucosamine-1-phosphate transferase subunits alpha and beta
RGD ID: 18925270
Description: ENCODES a protein that exhibits UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity (ortholog); INVOLVED IN carbohydrate phosphorylation (ortholog); establishment of localization in cell (ortholog); lysosome organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycoproteinosis (ortholog); Legg-Calve-Perthes disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N-acetylglucosamine-1-phosphate transferase alpha and beta subunits; N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,315,908 - 6,343,820 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,315,949 - 6,344,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gnptab
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,315,908 - 6,343,820 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,315,949 - 6,344,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GNPTAB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,745,499 - 101,830,959 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,745,499 - 101,830,959 (-)EnsemblGRCh38hg38GRCh38
GRCh3712102,139,277 - 102,224,737 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,663,408 - 100,748,763 (-)NCBINCBI36Build 36hg18NCBI36
Celera12101,803,304 - 101,888,673 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,198,884 - 99,284,601 (-)NCBIHuRef
CHM1_112102,105,957 - 102,191,339 (-)NCBICHM1_1
T2T-CHM13v2.012101,706,726 - 101,792,185 (-)NCBIT2T-CHM13v2.0
Gnptab
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,215,130 - 88,283,186 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,214,994 - 88,283,191 (+)EnsemblGRCm39 Ensembl
GRCm381088,379,134 - 88,447,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,379,132 - 88,447,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,842,157 - 87,910,074 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361087,809,211 - 87,877,128 (+)NCBIMGSCv36mm8
Celera1090,357,134 - 90,427,086 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.86NCBI
Gnptab
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,687,923 - 24,754,821 (+)NCBIGRCr8
mRatBN7.2722,800,502 - 22,866,336 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,800,485 - 22,866,933 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0728,956,363 - 29,023,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,956,512 - 29,022,868 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,063,329 - 29,130,166 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,084,137 - 25,149,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera719,960,704 - 20,027,442 (+)NCBICelera
Cytogenetic Map7q13NCBI
Gnptab
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,107,542 - 37,136,993 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,107,902 - 37,136,993 (-)NCBIChiLan1.0ChiLan1.0
GNPTAB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,813,251 - 109,904,003 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,809,649 - 109,900,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,328,026 - 99,418,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,727,949 - 102,816,560 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,729,615 - 102,816,560 (-)Ensemblpanpan1.1panPan2
GNPTAB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,659,108 - 40,724,498 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,631,279 - 40,704,365 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,027,451 - 41,092,978 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01541,313,158 - 41,378,930 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,285,330 - 41,379,054 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,567,331 - 40,640,075 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,676,876 - 40,742,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,950,892 - 41,016,624 (-)NCBIUU_Cfam_GSD_1.0
Gnptab
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,223,523 - 19,299,600 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,233,992 - 12,308,690 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,233,943 - 12,310,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPTAB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,361,872 - 82,460,814 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,264,640 - 82,460,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,352,843 - 86,413,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GNPTAB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,998,671 - 97,084,333 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1196,999,646 - 97,084,225 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037147,919,739 - 148,005,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006522   ⟹   ENSHGLP00000006441
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247506,315,908 - 6,343,820 (+)Ensembl
RefSeq Acc Id: XM_004844851   ⟹   XP_004844908
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247506,315,950 - 6,344,919 (+)NCBI
RefSeq Acc Id: XM_004844852   ⟹   XP_004844909
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247506,315,949 - 6,344,919 (+)NCBI
RefSeq Acc Id: XM_021258412   ⟹   XP_021114071
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247506,315,949 - 6,344,919 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844908 (Get FASTA)   NCBI Sequence Viewer  
  XP_004844909 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006441
Reference Protein Sequences
RefSeq Acc Id: XP_004844909   ⟸   XM_004844852
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021114071   ⟸   XM_021258412
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004844908   ⟸   XM_004844851
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000006441   ⟸   ENSHGLT00000006522


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004707 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006522 ENTREZGENE
NCBI Gene Gnptab ENTREZGENE