Polr1d (RNA polymerase I and III subunit D) - Rat Genome Database

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Gene: Polr1d (RNA polymerase I and III subunit D) Heterocephalus glaber
Analyze
Symbol: Polr1d
Name: RNA polymerase I and III subunit D
RGD ID: 18924942
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-directed 5'-3' RNA polymerase activity (inferred); protein dimerization activity (inferred); INVOLVED IN DNA-templated transcription (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Animal Disease Models (ortholog); genetic disease (ortholog); Hearing Loss (ortholog); FOUND IN DNA-directed RNA polymerase complex (inferred); RNA polymerase I complex (inferred); RNA polymerase III complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA-directed RNA polymerases I and III subunit RPAC2; polymerase (RNA) I polypeptide D, 16kDa; RNA polymerase I subunit D
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477610,810,952 - 10,875,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477610,872,975 - 10,874,852 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Polr1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477610,810,952 - 10,875,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477610,872,975 - 10,874,852 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
POLR1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,620,743 - 27,667,411 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1327,620,742 - 27,744,237 (+)EnsemblGRCh38hg38GRCh38
GRCh371328,194,880 - 28,241,548 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,094,003 - 27,139,548 (+)NCBINCBI36Build 36hg18NCBI36
Build 341327,094,028 - 27,095,583NCBI
Celera139,264,634 - 9,310,177 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef139,016,135 - 9,062,816 (+)NCBIHuRef
CHM1_11328,163,132 - 28,209,817 (+)NCBICHM1_1
T2T-CHM13v2.01326,841,857 - 26,888,521 (+)NCBIT2T-CHM13v2.0
Polr1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,013,525 - 147,048,171 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5147,013,860 - 147,048,407 (+)EnsemblGRCm39 Ensembl
GRCm385147,076,715 - 147,111,361 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,077,050 - 147,111,597 (+)EnsemblGRCm38mm10GRCm38
MGSCv375147,889,117 - 147,922,935 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,387,890 - 147,421,708 (+)NCBIMGSCv36mm8
Celera5145,066,833 - 145,100,924 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.73NCBI
Polr1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,084,505 - 13,118,069 (-)NCBIGRCr8
mRatBN7.2127,970,592 - 8,004,157 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,970,595 - 8,005,624 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,773,354 - 8,806,907 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,396,541 - 9,430,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,419,946 - 8,453,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,693,828 - 9,727,416 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,693,779 - 9,727,489 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,806,326 - 11,839,715 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,421,463 - 8,454,852 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera129,796,332 - 9,829,961 (-)NCBICelera
Cytogenetic Map12p11NCBI
Polr1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554977,029,557 - 7,029,931 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554977,029,556 - 7,030,128 (+)NCBIChiLan1.0ChiLan1.0
POLR1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21427,218,315 - 27,263,832 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11318,323,058 - 18,368,540 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,911,839 - 8,957,363 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11327,256,573 - 27,302,114 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1327,256,567 - 27,373,830 (+)Ensemblpanpan1.1panPan2
POLR1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12511,997,020 - 11,998,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2512,060,643 - 12,062,365 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02512,126,279 - 12,127,994 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2512,081,887 - 12,129,048 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12512,020,868 - 12,022,590 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02512,012,828 - 12,014,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02512,057,521 - 12,059,243 (-)NCBIUU_Cfam_GSD_1.0
LOC101959095
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945173,109,357 - 173,110,972 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647222,841,094 - 22,881,713 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647222,841,094 - 22,842,798 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl115,044,329 - 5,089,766 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1115,044,274 - 5,045,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,679,057 - 4,680,713 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POLR1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.136,773,426 - 6,819,045 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605737,572,551 - 37,618,065 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000004446   ⟹   ENSHGLP00000004385
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477610,810,952 - 10,874,858 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000004447   ⟹   ENSHGLP00000004386
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477610,872,605 - 10,875,214 (-)Ensembl
RefSeq Acc Id: XM_013075858   ⟹   XP_012931312
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477610,872,975 - 10,874,852 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012931312 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004386
GenBank Protein JAO01170 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012931312   ⟸   XM_013075858
- UniProtKB: A0A0P6JEX0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000004385   ⟸   ENSHGLT00000004446
RefSeq Acc Id: ENSHGLP00000004386   ⟸   ENSHGLT00000004447


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003202 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004447 ENTREZGENE
Gene3D-CATH 3.30.1360.10 UniProtKB/TrEMBL
InterPro RBP11-like UniProtKB/TrEMBL
  RBP11-like_dimer UniProtKB/TrEMBL
  RNA_pol_Rpb11_13-16kDa_CS UniProtKB/TrEMBL
  RNAP_AC19 UniProtKB/TrEMBL
  Rpo11-like UniProtKB/TrEMBL
NCBI Gene Polr1d ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III UniProtKB/TrEMBL
  DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2 UniProtKB/TrEMBL
Pfam RNA_pol_L_2 UniProtKB/TrEMBL
PROSITE RNA_POL_L_13KD UniProtKB/TrEMBL
Superfamily-SCOP SSF55257 UniProtKB/TrEMBL
UniProt A0A0P6JEX0 ENTREZGENE, UniProtKB/TrEMBL