Snip1 (Smad nuclear interacting protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Snip1 (Smad nuclear interacting protein 1) Heterocephalus glaber
Analyze
Symbol: Snip1
Name: Smad nuclear interacting protein 1
RGD ID: 18924886
Description: ENCODES a protein that exhibits transcription regulator inhibitor activity (ortholog); INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH ARTERIAL DISSECTION (ortholog); benign epilepsy with centrotemporal spikes (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: smad nuclear-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476420,280,055 - 20,292,916 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476420,280,055 - 20,292,916 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,534,449 - 37,554,293 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,534,449 - 37,554,293 (-)EnsemblGRCh38hg38GRCh38
GRCh37138,000,050 - 38,019,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,774,729 - 37,792,490 (-)NCBINCBI36Build 36hg18NCBI36
Celera136,280,132 - 36,297,891 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,116,864 - 36,136,791 (-)NCBIHuRef
CHM1_1138,116,178 - 38,136,124 (-)NCBICHM1_1
T2T-CHM13v2.0137,399,180 - 37,419,043 (-)NCBIT2T-CHM13v2.0
Snip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,960,465 - 124,967,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,960,465 - 124,967,835 (+)EnsemblGRCm39 Ensembl
GRCm384125,066,672 - 125,074,043 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4125,066,672 - 125,074,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,743,937 - 124,751,287 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,568,997 - 124,576,339 (+)NCBIMGSCv36mm8
Celera4123,387,926 - 123,395,275 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.99NCBI
Snip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,613,028 - 142,620,502 (+)NCBIGRCr8
mRatBN7.25137,328,371 - 137,335,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,328,371 - 137,335,845 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5140,032,513 - 140,039,986 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,802,531 - 141,810,004 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,809,697 - 141,817,170 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,275,273 - 19,282,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5143,063,099 - 143,070,884 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,831,845 - 146,839,471 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,409,078 - 144,416,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15144,419,070 - 144,426,979 (+)NCBI
Celera5135,846,577 - 135,854,025 (+)NCBICelera
Cytogenetic Map5q36NCBI
Snip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,353,182 - 15,365,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,352,080 - 15,365,545 (-)NCBIChiLan1.0ChiLan1.0
SNIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,284,872 - 189,302,648 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,413,926 - 188,431,693 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,807,488 - 36,827,347 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,156,936 - 38,176,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,155,375 - 38,176,803 (-)Ensemblpanpan1.1panPan2
SNIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,924,035 - 4,934,565 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,924,178 - 4,933,724 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,170,972 - 5,181,500 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,058,195 - 5,068,724 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl155,058,250 - 5,068,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,917,372 - 4,927,894 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,983,733 - 4,994,245 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,000,424 - 5,010,952 (+)NCBIUU_Cfam_GSD_1.0
Snip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505853,935,987 - 53,953,447 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,760,766 - 19,778,265 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,760,653 - 19,778,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,597,059 - 93,612,150 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,597,050 - 93,612,169 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,315,272 - 95,327,402 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,315,297 - 95,336,101 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,479,232 - 21,496,625 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004850983   ⟹   XP_004851040
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476420,280,055 - 20,292,916 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004851040 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017618
GenBank Protein JAN96942 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004851040   ⟸   XM_004850983
- UniProtKB: A0A0P6JTM8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012606 ENTREZGENE
Ensembl Transcript ENSHGLT00000017793 ENTREZGENE
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene Snip1 ENTREZGENE
PANTHER KANADAPTIN-RELATED UniProtKB/TrEMBL
  NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
UniProt A0A0P6JTM8 ENTREZGENE, UniProtKB/TrEMBL