Hypk (huntingtin interacting protein K) - Rat Genome Database

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Gene: Hypk (huntingtin interacting protein K) Heterocephalus glaber
Analyze
Symbol: Hypk
Name: huntingtin interacting protein K
RGD ID: 18924460
Description: ENCODES a protein that exhibits protein folding chaperone (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); protein stabilization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: huntingtin-interacting protein K
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480410,823,212 - 10,827,294 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Hypk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480410,823,212 - 10,827,294 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HYPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,800,421 - 43,804,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,796,142 - 43,804,427 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,092,619 - 44,096,625 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,879,913 - 41,882,079 (+)NCBINCBI36Build 36hg18NCBI36
Celera1520,982,083 - 20,984,249 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,915,481 - 20,917,649 (+)NCBIHuRef
CHM1_11544,210,872 - 44,213,040 (+)NCBICHM1_1
T2T-CHM13v2.01541,607,784 - 41,611,789 (+)NCBIT2T-CHM13v2.0
Hypk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,287,569 - 121,288,921 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,283,771 - 121,289,153 (+)EnsemblGRCm39 Ensembl
GRCm382121,457,088 - 121,458,440 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,453,290 - 121,458,672 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,282,824 - 121,284,176 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,148,542 - 121,149,880 (+)NCBIMGSCv36mm8
Celera2122,607,878 - 122,609,227 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.39NCBI
Hypk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,888,709 - 128,890,089 (+)NCBIGRCr8
mRatBN7.23108,434,997 - 108,436,370 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,432,539 - 108,436,370 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,109,430 - 112,110,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03120,704,951 - 120,706,323 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,365,357 - 118,366,729 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,423,684 - 113,425,064 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,423,693 - 113,424,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03119,963,795 - 119,965,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,262,767 - 108,264,495 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,163,508 - 108,165,275 (+)NCBI
Celera3107,336,201 - 107,337,573 (+)NCBICelera
Cytogenetic Map3q35NCBI
Hypk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,258,612 - 10,259,639 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,258,357 - 10,259,699 (+)NCBIChiLan1.0ChiLan1.0
HYPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,047,358 - 33,053,714 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,213,588 - 37,215,446 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,760,593 - 22,762,059 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,850,849 - 40,852,835 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,850,849 - 40,852,835 (+)Ensemblpanpan1.1panPan2
HYPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,541,713 - 10,544,572 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,543,289 - 10,544,569 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,599,664 - 10,602,970 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,677,815 - 10,681,121 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,677,228 - 10,681,115 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,586,937 - 10,590,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,708,866 - 10,712,172 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,828,600 - 10,831,906 (+)NCBIUU_Cfam_GSD_1.0
Hypk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,012,566 - 89,013,617 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,860,556 - 6,861,676 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,860,556 - 6,861,687 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HYPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,242,584 - 39,244,681 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048101,748,038 - 101,749,803 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021241769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01072819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021241769   ⟹   XP_021097428
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480410,823,212 - 10,827,294 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021097428 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021097428   ⟸   XM_021241769


Additional Information

Database Acc Id Source(s)
NCBI Gene Hypk ENTREZGENE