Eva1c (eva-1 homolog C) - Rat Genome Database

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Gene: Eva1c (eva-1 homolog C) Heterocephalus glaber
Analyze
Symbol: Eva1c
Name: eva-1 homolog C
RGD ID: 18924405
Description: ENCODES a protein that exhibits heparin binding (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); genetic disease (ortholog); FOUND IN extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein eva-1 homolog C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474520,747,018 - 20,835,259 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474520,746,101 - 20,835,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Eva1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474520,747,018 - 20,835,259 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474520,746,101 - 20,835,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EVA1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,411,723 - 32,515,387 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,412,006 - 32,515,397 (+)EnsemblGRCh38hg38GRCh38
GRCh372133,784,031 - 33,887,697 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362132,706,623 - 32,809,568 (+)NCBINCBI36Build 36hg18NCBI36
Build 342132,706,622 - 32,809,568NCBI
Celera2118,968,379 - 19,071,327 (+)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2119,193,621 - 19,296,983 (+)NCBIHuRef
CHM1_12133,346,618 - 33,449,422 (+)NCBICHM1_1
T2T-CHM13v2.02130,781,530 - 30,885,679 (+)NCBIT2T-CHM13v2.0
Eva1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391690,623,607 - 90,701,997 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1690,623,607 - 90,701,997 (+)EnsemblGRCm39 Ensembl
GRCm381690,826,719 - 90,905,109 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1690,826,719 - 90,905,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv371690,831,358 - 90,904,940 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361690,715,578 - 90,793,968 (+)NCBIMGSCv36mm8
MGSCv361691,497,214 - 91,571,089 (+)NCBIMGSCv36mm8
Celera1691,912,329 - 91,986,753 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1652.02NCBI
Eva1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,575,613 - 43,649,677 (+)NCBIGRCr8
mRatBN7.21130,089,510 - 30,163,596 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,089,365 - 30,163,596 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01131,001,697 - 31,075,784 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,002,451 - 31,075,809 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01134,613,264 - 34,687,258 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41130,818,803 - 30,891,855 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11130,818,630 - 30,891,737 (+)NCBI
Celera1129,757,158 - 29,831,194 (+)NCBICelera
Cytogenetic Map11q11NCBI
Eva1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540731,934,965 - 32,044,228 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540731,934,954 - 32,043,827 (+)NCBIChiLan1.0ChiLan1.0
EVA1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22228,529,545 - 28,635,687 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12123,389,541 - 23,492,275 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02118,778,766 - 18,881,877 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12132,160,420 - 32,260,968 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2132,160,420 - 32,260,968 (+)Ensemblpanpan1.1panPan2
EVA1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13127,176,246 - 27,256,810 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3127,177,136 - 27,256,293 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3127,171,143 - 27,250,014 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03127,296,662 - 27,376,978 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3127,297,414 - 27,376,467 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13127,241,798 - 27,321,809 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03127,253,329 - 27,333,645 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03127,760,871 - 27,840,881 (+)NCBIUU_Cfam_GSD_1.0
Eva1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497127,764,993 - 27,847,927 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365009,619,904 - 9,702,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365009,621,221 - 9,704,793 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EVA1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13196,067,669 - 196,173,198 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113196,067,643 - 196,172,673 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213206,114,917 - 206,184,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EVA1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1259,612,527 - 59,717,315 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl259,611,890 - 59,716,572 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660712,149,759 - 2,258,262 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010946   ⟹   ENSHGLP00000010824
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474520,747,018 - 20,835,259 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000010947   ⟹   ENSHGLP00000010825
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474520,747,018 - 20,835,259 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000010948   ⟹   ENSHGLP00000010826
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474520,747,436 - 20,834,950 (+)Ensembl
RefSeq Acc Id: XM_004842284   ⟹   XP_004842341
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,746,108 - 20,835,142 (+)NCBI
RefSeq Acc Id: XM_021256156   ⟹   XP_021111815
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,746,107 - 20,835,142 (+)NCBI
RefSeq Acc Id: XM_021256157   ⟹   XP_021111816
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,746,106 - 20,835,142 (+)NCBI
RefSeq Acc Id: XM_021256158   ⟹   XP_021111817
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,746,105 - 20,835,142 (+)NCBI
RefSeq Acc Id: XM_021256160   ⟹   XP_021111819
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,746,107 - 20,835,142 (+)NCBI
RefSeq Acc Id: XM_021256161   ⟹   XP_021111820
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,746,101 - 20,835,142 (+)NCBI
RefSeq Acc Id: XM_021256162   ⟹   XP_021111821
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474520,746,110 - 20,835,142 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021111820   ⟸   XM_021256161
- Peptide Label: isoform X6
- UniProtKB: G5BE98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111817   ⟸   XM_021256158
- Peptide Label: isoform X4
- UniProtKB: G5BE98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111816   ⟸   XM_021256157
- Peptide Label: isoform X3
- UniProtKB: G5BE98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111815   ⟸   XM_021256156
- Peptide Label: isoform X2
- UniProtKB: G5BE98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111819   ⟸   XM_021256160
- Peptide Label: isoform X5
RefSeq Acc Id: XP_004842341   ⟸   XM_004842284
- Peptide Label: isoform X1
- UniProtKB: G5BE98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111821   ⟸   XM_021256162
- Peptide Label: isoform X7
- UniProtKB: G5BE98 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010826   ⟸   ENSHGLT00000010948
RefSeq Acc Id: ENSHGLP00000010825   ⟸   ENSHGLT00000010947
RefSeq Acc Id: ENSHGLP00000010824   ⟸   ENSHGLT00000010946


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007768 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010946 ENTREZGENE
Gene3D-CATH 2.60.120.740 UniProtKB/TrEMBL
InterPro EVA1_dom UniProtKB/TrEMBL
  Lectin_gal-bd_dom UniProtKB/TrEMBL
  Lectin_gal-bd_sf UniProtKB/TrEMBL
NCBI Gene Eva1c ENTREZGENE
PANTHER PROTEIN EVA-1 HOMOLOG A UniProtKB/TrEMBL
  PROTEIN EVA-1 HOMOLOG B-RELATED UniProtKB/TrEMBL
Pfam FAM176 UniProtKB/TrEMBL
  Gal_Lectin UniProtKB/TrEMBL
PROSITE SUEL_LECTIN UniProtKB/TrEMBL
UniProt G5BE98 ENTREZGENE, UniProtKB/TrEMBL