E2f2 (E2F transcription factor 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: E2f2 (E2F transcription factor 2) Heterocephalus glaber
Analyze
Symbol: E2f2
Name: E2F transcription factor 2
RGD ID: 18924330
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); lens fiber cell apoptotic process (ortholog); negative regulation of sprouting angiogenesis (ortholog); ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); COVID-19 (ortholog); Disease Progression (ortholog); FOUND IN nucleus (inferred); RNA polymerase II transcription regulator complex (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription factor E2F2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247648,135,470 - 8,157,731 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247648,132,283 - 8,158,190 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
E2f2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247648,135,470 - 8,157,731 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247648,132,283 - 8,158,190 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
E2F2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,505,212 - 23,531,233 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,506,438 - 23,531,233 (-)EnsemblGRCh38hg38GRCh38
GRCh37123,832,930 - 23,857,725 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,705,509 - 23,730,300 (-)NCBINCBI36Build 36hg18NCBI36
Build 34123,578,227 - 23,603,019NCBI
Celera122,162,636 - 22,187,415 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef122,083,477 - 22,108,254 (-)NCBIHuRef
CHM1_1123,945,595 - 23,970,369 (-)NCBICHM1_1
T2T-CHM13v2.0123,339,773 - 23,365,799 (-)NCBIT2T-CHM13v2.0
E2f2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394135,899,585 - 135,923,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4135,899,705 - 135,923,368 (+)EnsemblGRCm39 Ensembl
GRCm384136,172,274 - 136,196,057 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,172,394 - 136,196,057 (+)EnsemblGRCm38mm10GRCm38
MGSCv374135,728,309 - 135,751,972 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364135,444,470 - 135,466,790 (+)NCBIMGSCv36mm8
Celera4134,369,818 - 134,393,475 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map468.34NCBI
E2f2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85153,682,789 - 153,706,087 (+)NCBIGRCr8
mRatBN7.25148,399,193 - 148,422,595 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5148,399,642 - 148,421,217 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05154,516,611 - 154,540,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5154,522,119 - 154,540,265 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05158,290,231 - 158,313,411 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5146,801,415 - 146,824,688 (+)NCBICelera
Cytogenetic Map5q36NCBI
E2f2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554523,494,919 - 3,518,487 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554523,498,077 - 3,518,033 (-)NCBIChiLan1.0ChiLan1.0
E2F2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21203,410,482 - 203,436,603 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11202,513,407 - 202,539,532 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,696,695 - 22,722,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,683,291 - 23,707,951 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl123,683,293 - 23,707,951 (-)Ensemblpanpan1.1panPan2
E2F2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,901,009 - 75,923,406 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,901,058 - 75,923,255 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,471,074 - 72,493,421 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,460,446 - 76,482,801 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,459,883 - 76,480,634 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,282,735 - 73,305,077 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,289,942 - 74,312,301 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,295,343 - 75,317,658 (+)NCBIUU_Cfam_GSD_1.0
E2f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,893,125 - 42,912,970 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364748,719,253 - 8,737,763 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364748,719,243 - 8,739,811 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
E2F2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl681,377,924 - 81,398,867 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1681,377,922 - 81,398,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
E2F2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120109,146,567 - 109,171,540 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20109,146,587 - 109,168,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660337,158,767 - 7,183,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013074186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01044697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSHGLT00000018380   ⟹   ENSHGLP00000018199
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247648,135,470 - 8,157,731 (-)Ensembl
RefSeq Acc Id: XM_013074186   ⟹   XP_012929640
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247648,132,283 - 8,158,190 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012929640 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018199
RefSeq Acc Id: XP_012929640   ⟸   XM_013074186
- UniProtKB: G5BHY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000018199   ⟸   ENSHGLT00000018380


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013011 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018380 ENTREZGENE
Gene3D-CATH 6.10.250.540 UniProtKB/TrEMBL
  Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain UniProtKB/TrEMBL
InterPro E2F UniProtKB/TrEMBL
  E2F-DP_heterodim UniProtKB/TrEMBL
  E2F_CC-MB UniProtKB/TrEMBL
  E2F_WHTH_DNA-bd_dom UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene E2f2 ENTREZGENE
PANTHER TRANSCRIPTION FACTOR E2F UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR E2F2 UniProtKB/TrEMBL
Pfam E2F_CC-MB UniProtKB/TrEMBL
  E2F_TDP UniProtKB/TrEMBL
SMART E2F_TDP UniProtKB/TrEMBL
Superfamily-SCOP E2F-DP heterodimerization region UniProtKB/TrEMBL
  Winged helix' DNA-binding domain UniProtKB/TrEMBL
UniProt G5BHY7 ENTREZGENE, UniProtKB/TrEMBL