Exoc3l4 (exocyst complex component 3 like 4)

Gene: Exoc3l4 (exocyst complex component 3 like 4) Heterocephalus glaber

Analyze

Symbol:

Exoc3l4

Name:

exocyst complex component 3 like 4

RGD ID:

18924258

Description:

ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease axonal type 2O (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

exocyst complex component 3-like protein 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	1,583,605 - 1,590,340 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Charcot-Marie-Tooth disease axonal type 2O (ISO)

genetic disease (ISO)

mitochondrial complex IV deficiency nuclear type 17 (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Exoc3l4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	1,583,605 - 1,590,340 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

EXOC3L4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	103,094,174 - 103,110,559 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	103,094,725 - 103,110,559 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	103,561,062 - 103,576,896 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	102,636,234 - 102,646,649 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	83,620,482 - 83,630,896 (+)	NCBI		Celera
Cytogenetic Map	14	q32.32	NCBI
HuRef	14	83,745,116 - 83,755,273 (+)	NCBI		HuRef
CHM1_1	14	103,504,274 - 103,514,279 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	97,330,672 - 97,354,998 (+)	NCBI		T2T-CHM13v2.0

Exoc3l4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	111,383,864 - 111,398,114 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	111,383,451 - 111,398,112 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	111,417,430 - 111,431,680 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	111,417,017 - 111,431,678 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	112,655,641 - 112,669,394 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	111,865,397 - 111,878,991 (+)	NCBI		MGSCv36	mm8
Celera	12	112,607,549 - 112,621,304 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	60.98	NCBI

Exoc3l4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	136,273,857 - 136,287,877 (+)	NCBI		GRCr8
mRatBN7.2	6	130,452,680 - 130,466,684 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	130,452,661 - 130,466,683 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	130,622,650 - 130,636,301 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	130,918,638 - 130,932,293 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	130,282,788 - 130,296,312 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	135,866,132 - 135,880,724 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	135,866,739 - 135,880,721 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	144,534,910 - 144,549,565 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	136,172,535 - 136,186,059 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	136,183,474 - 136,192,244 (+)	NCBI
Celera	6	128,009,469 - 128,022,993 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

Exoc3l4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	2,140,485 - 2,152,290 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	2,140,599 - 2,155,781 (+)	NCBI	ChiLan1.0	ChiLan1.0

EXOC3L4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	104,255,048 - 104,265,264 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	103,471,547 - 103,481,812 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	83,716,816 - 83,732,656 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	103,530,535 - 103,545,316 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	103,535,510 - 103,545,316 (+)	Ensembl	panpan1.1		panPan2

EXOC3L4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	70,943,515 - 70,956,211 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	70,946,994 - 70,955,867 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	70,455,620 - 70,468,383 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	71,220,202 - 71,232,944 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	71,219,425 - 71,232,600 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	70,883,775 - 70,896,486 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	70,948,554 - 70,961,303 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	71,348,550 - 71,361,306 (+)	NCBI		UU_Cfam_GSD_1.0

Exoc3l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	3,084,056 - 3,098,365 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	1,913,339 - 1,922,202 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	1,913,013 - 1,921,499 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EXOC3L4
(Sus scrofa - pig)

No map positions available.

EXOC3L4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	81,072,801 - 81,086,476 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	81,073,662 - 81,086,476 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	68,262,418 - 68,297,086 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021243902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021243937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01009080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSHGLT00000019102 ⟹ ENSHGLP00000018913

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624734	1,583,605 - 1,590,340 (-)	Ensembl

RefSeq Acc Id:

XM_021243902 ⟹ XP_021099561

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243908 ⟹ XP_021099567

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243914 ⟹ XP_021099573

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243920 ⟹ XP_021099579

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243924 ⟹ XP_021099583

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243927 ⟹ XP_021099586

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243930 ⟹ XP_021099589

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243936 ⟹ XP_021099595

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,279 - 1,594,719 (-)	NCBI

RefSeq Acc Id:

XM_021243937 ⟹ XP_021099596

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624734	1,583,605 - 1,590,340 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021099561	(Get FASTA)	NCBI Sequence Viewer
	XP_021099567	(Get FASTA)	NCBI Sequence Viewer
	XP_021099573	(Get FASTA)	NCBI Sequence Viewer
	XP_021099579	(Get FASTA)	NCBI Sequence Viewer
	XP_021099583	(Get FASTA)	NCBI Sequence Viewer
	XP_021099586	(Get FASTA)	NCBI Sequence Viewer
	XP_021099589	(Get FASTA)	NCBI Sequence Viewer
	XP_021099595	(Get FASTA)	NCBI Sequence Viewer
	XP_021099596	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000018913

RefSeq Acc Id:	XP_021099583 ⟸ XM_021243924
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099595 ⟸ XM_021243936
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099579 ⟸ XM_021243920
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099561 ⟸ XM_021243902
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099589 ⟸ XM_021243930
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099586 ⟸ XM_021243927
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099573 ⟸ XM_021243914
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099567 ⟸ XM_021243908
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_021099596 ⟸ XM_021243937
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSHGLP00000018913 ⟸ ENSHGLT00000019102

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000013564	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000019102	ENTREZGENE
NCBI Gene	Exoc3l4	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar