Galnt3 (polypeptide N-acetylgalactosaminyltransferase 3) - Rat Genome Database

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Gene: Galnt3 (polypeptide N-acetylgalactosaminyltransferase 3) Heterocephalus glaber
Analyze
Symbol: Galnt3
Name: polypeptide N-acetylgalactosaminyltransferase 3
RGD ID: 18924151
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); manganese ion binding (ortholog); INVOLVED IN protein O-linked glycosylation (ortholog); protein O-linked glycosylation via serine (ortholog); protein O-linked glycosylation via threonine (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); benign familial infantile seizures 3 (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,559,903 - 3,591,615 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,557,946 - 3,613,235 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Galnt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,559,903 - 3,591,615 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,557,946 - 3,613,235 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GALNT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382165,747,588 - 165,794,692 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2165,747,588 - 165,794,659 (-)EnsemblGRCh38hg38GRCh38
GRCh372166,604,098 - 166,650,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,312,559 - 166,359,049 (-)NCBINCBI36Build 36hg18NCBI36
Build 342166,428,830 - 166,452,717NCBI
Celera2160,214,267 - 160,260,749 (-)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2158,486,232 - 158,532,744 (-)NCBIHuRef
CHM1_12166,610,616 - 166,657,104 (-)NCBICHM1_1
T2T-CHM13v2.02166,204,962 - 166,251,751 (-)NCBIT2T-CHM13v2.0
Galnt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,913,110 - 65,955,217 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,913,110 - 65,955,338 (-)EnsemblGRCm39 Ensembl
GRCm38266,082,766 - 66,125,056 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl266,082,766 - 66,124,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv37265,920,823 - 65,962,850 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,884,272 - 65,934,377 (-)NCBIMGSCv36mm8
Celera267,762,030 - 67,803,898 (-)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.99NCBI
Galnt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8371,150,559 - 71,187,321 (-)NCBIGRCr8
mRatBN7.2350,742,500 - 50,779,266 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,742,512 - 50,766,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx354,085,866 - 54,109,634 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,669,491 - 62,693,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,445,630 - 60,469,408 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0352,174,469 - 52,212,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl352,175,547 - 52,212,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,806,436 - 58,843,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4348,026,128 - 48,049,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,923,236 - 47,946,144 (-)NCBI
Celera350,332,309 - 50,356,022 (-)NCBICelera
Cytogenetic Map3q21NCBI
Galnt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,379,164 - 8,406,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,365,951 - 8,406,988 (+)NCBIChiLan1.0ChiLan1.0
GALNT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21368,400,623 - 68,447,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B68,413,360 - 68,467,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B53,014,933 - 53,066,330 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B170,492,482 - 170,539,231 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,335,216 - 170,539,231 (-)Ensemblpanpan1.1panPan2
GALNT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13610,895,366 - 10,990,848 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3610,896,128 - 10,919,000 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3611,040,139 - 11,084,227 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03611,029,831 - 11,074,091 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3611,030,584 - 11,124,756 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13611,111,447 - 11,155,527 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03611,084,131 - 11,128,392 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03611,196,286 - 11,240,452 (-)NCBIUU_Cfam_GSD_1.0
Galnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303128,040,946 - 128,145,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646913,538,258 - 13,576,657 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646913,538,349 - 13,576,608 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,293,614 - 72,342,435 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,276,502 - 72,343,524 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21580,794,975 - 80,818,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11051,237,150 - 51,284,301 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1051,236,756 - 51,259,062 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040148,228,855 - 148,279,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025344   ⟹   ENSHGLP00000025122
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247873,559,903 - 3,591,615 (-)Ensembl
RefSeq Acc Id: XM_004857604   ⟹   XP_004857661
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,557,946 - 3,612,805 (-)NCBI
RefSeq Acc Id: XM_021238597   ⟹   XP_021094256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,557,946 - 3,612,805 (-)NCBI
RefSeq Acc Id: XM_021238598   ⟹   XP_021094257
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,557,946 - 3,613,235 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857661 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094256 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094257 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025122
GenBank Protein JAO02988 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021094257   ⟸   XM_021238598
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004857661   ⟸   XM_004857604
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JEW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094256   ⟸   XM_021238597
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000025122   ⟸   ENSHGLT00000025344


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017896 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025344 ENTREZGENE
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report hgl:101710129 UniProtKB/TrEMBL
NCBI Gene Galnt3 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 3 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A0P6JEW3 ENTREZGENE, UniProtKB/TrEMBL