Atp8a1 (ATPase phospholipid transporting 8A1) - Rat Genome Database

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Gene: Atp8a1 (ATPase phospholipid transporting 8A1) Heterocephalus glaber
Analyze
Symbol: Atp8a1
Name: ATPase phospholipid transporting 8A1
RGD ID: 18924074
Description: ENCODES a protein that exhibits phosphatidylserine flippase activity (ortholog); INVOLVED IN aminophospholipid translocation (ortholog); learning (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phospholipid-transporting ATPase IA; putative phospholipid-transporting ATPase IA
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476124,285,280 - 24,508,915 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476124,285,317 - 24,508,837 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp8a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476124,285,280 - 24,508,915 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476124,285,317 - 24,508,837 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP8A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38442,408,373 - 42,657,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl442,408,373 - 42,657,121 (-)EnsemblGRCh38hg38GRCh38
GRCh37442,410,390 - 42,659,122 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36442,105,147 - 42,353,879 (-)NCBINCBI36Build 36hg18NCBI36
Build 34442,255,562 - 42,499,818NCBI
Celera442,858,235 - 43,107,011 (-)NCBICelera
Cytogenetic Map4p13NCBI
HuRef441,731,596 - 41,980,330 (-)NCBIHuRef
CHM1_1442,410,660 - 42,659,431 (-)NCBICHM1_1
T2T-CHM13v2.0442,382,233 - 42,630,975 (-)NCBIT2T-CHM13v2.0
Atp8a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39567,775,482 - 68,004,822 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl567,775,483 - 68,004,777 (-)EnsemblGRCm39 Ensembl
GRCm38567,618,139 - 67,847,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,618,140 - 67,847,434 (-)EnsemblGRCm38mm10GRCm38
MGSCv37568,009,379 - 68,238,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36567,897,275 - 68,126,566 (-)NCBIMGSCv36mm8
Celera564,913,563 - 65,141,756 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map536.15NCBI
Atp8a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81440,668,932 - 40,911,465 (+)NCBIGRCr8
mRatBN7.21440,315,013 - 40,557,572 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,315,049 - 40,554,611 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01441,972,398 - 42,210,555 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,015,347 - 42,206,311 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01441,770,273 - 42,007,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41442,923,309 - 43,165,666 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11442,961,030 - 43,105,186 (+)NCBI
Celera1439,507,549 - 39,715,322 (+)NCBICelera
Cytogenetic Map14p11NCBI
Atp8a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,142,049 - 5,362,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,142,049 - 5,362,031 (+)NCBIChiLan1.0ChiLan1.0
ATP8A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2342,591,650 - 42,844,168 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1442,782,525 - 43,035,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0436,729,820 - 36,978,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1442,577,993 - 42,826,610 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl442,582,538 - 42,826,446 (-)Ensemblpanpan1.1panPan2
ATP8A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11339,366,692 - 39,588,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1339,368,470 - 39,588,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1339,341,834 - 39,565,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,855,496 - 40,079,905 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,859,687 - 40,079,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11339,543,722 - 39,767,959 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01339,656,584 - 39,880,750 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01340,121,639 - 40,345,993 (-)NCBIUU_Cfam_GSD_1.0
Atp8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528536,519,932 - 36,736,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364829,562,207 - 9,778,609 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364829,562,214 - 9,778,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP8A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl833,387,627 - 33,638,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1833,384,493 - 33,637,299 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2835,180,910 - 35,309,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP8A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,667,704 - 7,933,337 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl277,667,781 - 7,933,325 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604753,957,739 - 54,230,486 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025900   ⟹   ENSHGLP00000025673
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476124,285,280 - 24,508,915 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000025901   ⟹   ENSHGLP00000025674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476124,285,280 - 24,508,915 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000025902   ⟹   ENSHGLP00000025675
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476124,285,323 - 24,505,932 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000025903   ⟹   ENSHGLP00000025676
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476124,285,576 - 24,336,355 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000025904   ⟹   ENSHGLP00000025677
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476124,312,277 - 24,315,847 (+)Ensembl
RefSeq Acc Id: XM_004849787   ⟹   XP_004849844
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476124,285,318 - 24,508,837 (+)NCBI
RefSeq Acc Id: XM_004849788   ⟹   XP_004849845
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476124,285,318 - 24,508,837 (+)NCBI
RefSeq Acc Id: XM_004849790   ⟹   XP_004849847
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476124,285,318 - 24,508,837 (+)NCBI
RefSeq Acc Id: XM_021262414   ⟹   XP_021118073
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476124,285,317 - 24,477,460 (+)NCBI
RefSeq Acc Id: XM_021262415   ⟹   XP_021118074
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476124,314,856 - 24,508,837 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021118073   ⟸   XM_021262414
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J3D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849845   ⟸   XM_004849788
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J3D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849847   ⟸   XM_004849790
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J3D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849844   ⟸   XM_004849787
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J3D8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118074   ⟸   XM_021262415
- Peptide Label: isoform X5
- UniProtKB: G5AS20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025676   ⟸   ENSHGLT00000025903
RefSeq Acc Id: ENSHGLP00000025677   ⟸   ENSHGLT00000025904
RefSeq Acc Id: ENSHGLP00000025673   ⟸   ENSHGLT00000025900
RefSeq Acc Id: ENSHGLP00000025675   ⟸   ENSHGLT00000025902
RefSeq Acc Id: ENSHGLP00000025674   ⟸   ENSHGLT00000025901


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018277 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025900 ENTREZGENE
  ENSHGLT00000025901 ENTREZGENE
  ENSHGLT00000025902 ENTREZGENE
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp8a1 ENTREZGENE
PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE IA UniProtKB/TrEMBL
  PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A0P6J3D8 ENTREZGENE, UniProtKB/TrEMBL
  G5AS20 ENTREZGENE, UniProtKB/TrEMBL