Pdzk1 (PDZ domain containing 1) - Rat Genome Database

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Gene: Pdzk1 (PDZ domain containing 1) Heterocephalus glaber
Analyze
Symbol: Pdzk1
Name: PDZ domain containing 1
RGD ID: 18924062
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); protein-containing complex binding (ortholog); scavenger receptor binding (ortholog); INVOLVED IN carnitine transport (ortholog); in utero embryonic development (ortholog); positive regulation of cation transmembrane transport (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Breast Neoplasms (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Na(+)/H(+) exchange regulatory cofactor NHE-RF3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,022,967 - 17,057,447 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,023,837 - 17,057,160 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pdzk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,022,967 - 17,057,447 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,023,837 - 17,057,160 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PDZK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,670,852 - 145,707,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,670,852 - 145,708,148 (-)EnsemblGRCh38hg38GRCh38
GRCh371145,727,666 - 145,764,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,439,083 - 144,475,430 (+)NCBINCBI36Build 36hg18NCBI36
Build 341143,216,769 - 143,253,117NCBI
Celera1119,930,736 - 119,957,156 (+)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,691,465 - 119,728,015 (+)NCBIHuRef
CHM1_11147,038,978 - 147,075,526 (-)NCBICHM1_1
T2T-CHM13v2.01144,787,642 - 144,824,930 (-)NCBIT2T-CHM13v2.0
Pdzk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,736,772 - 96,778,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,736,600 - 96,778,242 (+)EnsemblGRCm39 Ensembl
GRCm38396,829,456 - 96,870,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,829,284 - 96,870,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,633,988 - 96,674,849 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,915,531 - 96,956,331 (+)NCBIMGSCv36mm8
Celera398,239,046 - 98,278,106 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map342.0NCBI
Pdzk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,064,995 - 187,096,348 (+)NCBIGRCr8
mRatBN7.22184,376,161 - 184,407,514 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,376,161 - 184,407,514 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2192,046,710 - 192,077,941 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,846,505 - 189,877,666 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,679,274 - 184,710,509 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,965,685 - 198,999,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,965,685 - 198,999,323 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,452,670 - 218,484,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,643,593 - 191,675,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,606,346 - 191,638,749 (+)NCBI
Celera2176,900,642 - 176,931,947 (+)NCBICelera
Cytogenetic Map2q34NCBI
Pdzk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568386,904 - 436,346 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955568405,697 - 436,346 (+)NCBIChiLan1.0ChiLan1.0
PDZK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,060,229 - 103,125,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,647,669 - 102,708,517 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,034,097 - 122,091,823 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,579,273 - 113,615,526 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,579,273 - 113,615,390 (-)Ensemblpanpan1.1panPan2
PDZK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,496,977 - 58,536,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1757,964,905 - 58,005,087 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,493,230 - 59,533,453 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11758,366,239 - 58,406,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,427,299 - 58,467,509 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,153,604 - 59,193,832 (-)NCBIUU_Cfam_GSD_1.0
Pdzk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,550,890 - 20,577,629 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936867426,648 - 439,512 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,625,080 - 99,657,161 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,625,085 - 99,657,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,286,291 - 109,324,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDZK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12013,026,422 - 13,076,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2013,040,475 - 13,079,241 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603815,720,272 - 15,756,120 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013504   ⟹   ENSHGLP00000013364
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477217,022,967 - 17,057,447 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000013505   ⟹   ENSHGLP00000013365
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477217,022,967 - 17,053,124 (-)Ensembl
RefSeq Acc Id: XM_013075498   ⟹   XP_012930952
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477217,023,837 - 17,056,695 (-)NCBI
RefSeq Acc Id: XM_021265805   ⟹   XP_021121464
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477217,023,837 - 17,057,160 (-)NCBI
RefSeq Acc Id: XM_021265806   ⟹   XP_021121465
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477217,023,837 - 17,052,655 (-)NCBI
RefSeq Acc Id: XM_021265807   ⟹   XP_021121466
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477217,023,837 - 17,044,824 (-)NCBI
RefSeq Acc Id: XM_021265808   ⟹   XP_021121467
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477217,023,837 - 17,057,132 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012930952 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121464 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121465 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121466 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121467 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06680 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013365
GenBank Protein JAO03105 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021121464   ⟸   XM_021265805
- UniProtKB: G5BBL9 (UniProtKB/TrEMBL),   A0A0P6JYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121467   ⟸   XM_021265808
- UniProtKB: G5BBL9 (UniProtKB/TrEMBL),   A0A0P6JYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012930952   ⟸   XM_013075498
- UniProtKB: G5BBL9 (UniProtKB/TrEMBL),   A0A0P6JYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121465   ⟸   XM_021265806
- UniProtKB: G5BBL9 (UniProtKB/TrEMBL),   A0A0P6JYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121466   ⟸   XM_021265807
- UniProtKB: G5BBL9 (UniProtKB/TrEMBL),   A0A0P6JYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000013365   ⟸   ENSHGLT00000013505
RefSeq Acc Id: ENSHGLP00000013364   ⟸   ENSHGLT00000013504


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009553 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013505 ENTREZGENE
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report hgl:101696284 UniProtKB/TrEMBL
NCBI Gene Pdzk1 ENTREZGENE
PANTHER GH04176P UniProtKB/TrEMBL
  PDZ DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
PROSITE PDZ UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/TrEMBL
UniProt A0A0P6JYD9 ENTREZGENE, UniProtKB/TrEMBL
  G5BBL9 ENTREZGENE, UniProtKB/TrEMBL