Btaf1 (B-TFIID TATA-box binding protein associated factor 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Btaf1 (B-TFIID TATA-box binding protein associated factor 1) Heterocephalus glaber
Analyze
Symbol: Btaf1
Name: B-TFIID TATA-box binding protein associated factor 1
RGD ID: 18924048
Description: ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); transcription coregulator activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA-binding protein-associated factor 172
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247373,215,679 - 3,330,623 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247373,215,644 - 3,331,894 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Btaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247373,215,679 - 3,330,623 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247373,215,644 - 3,331,894 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BTAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381091,923,770 - 92,031,437 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1091,923,770 - 92,031,437 (+)EnsemblGRCh38hg38GRCh38
GRCh371093,683,527 - 93,791,194 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361093,673,716 - 93,780,062 (+)NCBINCBI36Build 36hg18NCBI36
Build 341093,673,715 - 93,780,058NCBI
Celera1087,427,411 - 87,534,594 (+)NCBICelera
Cytogenetic Map10q23.32NCBI
HuRef1087,312,494 - 87,418,817 (+)NCBIHuRef
CHM1_11093,965,490 - 94,071,828 (+)NCBICHM1_1
T2T-CHM13v2.01092,805,881 - 92,913,817 (+)NCBIT2T-CHM13v2.0
Btaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391936,903,479 - 36,991,457 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1936,903,479 - 36,990,152 (+)EnsemblGRCm39 Ensembl
GRCm381936,926,079 - 37,014,057 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1936,926,079 - 37,012,752 (+)EnsemblGRCm38mm10GRCm38
MGSCv371937,000,569 - 37,088,547 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361936,991,223 - 37,079,201 (+)NCBIMGSCv36mm8
Celera1937,701,431 - 37,790,204 (+)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.02NCBI
Btaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,065,728 - 244,156,457 (+)NCBIGRCr8
mRatBN7.21234,653,219 - 234,743,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,653,156 - 234,743,903 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,057,912 - 243,133,573 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01249,985,875 - 250,061,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,824,083 - 242,899,534 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01255,564,247 - 255,654,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1255,564,409 - 255,654,932 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01263,040,091 - 263,130,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41241,212,431 - 241,287,889 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1231,760,769 - 231,836,199 (+)NCBICelera
Cytogenetic Map1q53NCBI
Btaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554251,241,792 - 1,337,918 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554251,239,640 - 1,350,327 (-)NCBIChiLan1.0ChiLan1.0
BTAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28103,960,535 - 104,068,616 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110103,965,850 - 104,074,608 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01088,671,438 - 88,778,452 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11092,193,094 - 92,298,865 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1092,193,094 - 92,298,865 (+)Ensemblpanpan1.1panPan2
BTAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1286,415,399 - 6,510,715 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl286,415,513 - 6,521,723 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha286,591,413 - 6,686,691 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0286,669,523 - 6,764,934 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl286,669,352 - 6,764,932 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1286,395,736 - 6,490,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0286,429,022 - 6,524,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0286,593,877 - 6,689,184 (+)NCBIUU_Cfam_GSD_1.0
Btaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721340,995,303 - 41,088,484 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366012,627,900 - 2,721,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366012,629,248 - 2,721,082 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14103,530,787 - 103,642,266 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114103,530,746 - 103,641,082 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214113,043,937 - 113,154,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BTAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1985,199,462 - 85,306,352 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl985,236,067 - 85,306,935 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604845,930,020 - 46,036,676 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000014705   ⟹   ENSHGLP00000014560
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247373,215,679 - 3,330,623 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000014706   ⟹   ENSHGLP00000014561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247373,230,111 - 3,330,496 (+)Ensembl
RefSeq Acc Id: XM_004838507   ⟹   XP_004838564
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247373,215,644 - 3,331,894 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004838564 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014560
  ENSHGLP00100061522
GenBank Protein JAO00568 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004838564   ⟸   XM_004838507
- UniProtKB: A0A0P6JHM9 (UniProtKB/TrEMBL),   G5BV08 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014561   ⟸   ENSHGLT00000014706
Ensembl Acc Id: ENSHGLP00000014560   ⟸   ENSHGLT00000014705


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010425 Ensembl, ENTREZGENE
  ENSHGLG00100002072 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014705 ENTREZGENE
  ENSHGLT00100050453 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Mot1 UniProtKB/TrEMBL
  Mot1_ATP-bd UniProtKB/TrEMBL
  Mot1_central_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report hgl:101725093 UniProtKB/TrEMBL
NCBI Gene Btaf1 ENTREZGENE
PANTHER PTHR36498 UniProtKB/TrEMBL
  TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 UniProtKB/TrEMBL
Pfam DUF3535 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6JHM9 ENTREZGENE, UniProtKB/TrEMBL
  G5BV08 ENTREZGENE, UniProtKB/TrEMBL