Suds3 (SDS3 homolog, SIN3A corepressor complex component) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Suds3 (SDS3 homolog, SIN3A corepressor complex component) Heterocephalus glaber
Analyze
Symbol: Suds3
Name: SDS3 homolog, SIN3A corepressor complex component
RGD ID: 18923834
Description: ENCODES a protein that exhibits enzyme binding (ortholog); histone deacetylase activity (ortholog); identical protein binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sin3 histone deacetylase corepressor complex component SDS3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474715,104,630 - 15,138,809 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Suds3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474715,104,630 - 15,138,809 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SUDS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812118,376,555 - 118,418,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12118,376,555 - 118,418,033 (+)EnsemblGRCh38hg38GRCh38
GRCh3712118,814,360 - 118,855,838 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612117,298,741 - 117,340,223 (+)NCBINCBI36Build 36hg18NCBI36
Celera12118,447,308 - 118,488,791 (+)NCBICelera
Cytogenetic Map12q24.23NCBI
HuRef12115,823,578 - 115,865,286 (+)NCBIHuRef
CHM1_112118,782,210 - 118,823,650 (+)NCBICHM1_1
T2T-CHM13v2.012118,363,824 - 118,405,300 (+)NCBIT2T-CHM13v2.0
Suds3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395117,229,743 - 117,257,980 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5117,229,745 - 117,254,178 (-)EnsemblGRCm39 Ensembl
GRCm385117,091,678 - 117,115,993 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5117,091,680 - 117,116,113 (-)EnsemblGRCm38mm10GRCm38
MGSCv375117,541,689 - 117,566,002 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365117,352,714 - 117,376,963 (-)NCBIMGSCv36mm8
Celera5114,181,513 - 114,205,973 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.88NCBI
Suds3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81245,137,964 - 45,160,413 (+)NCBIGRCr8
mRatBN7.21239,477,181 - 39,499,633 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1239,477,568 - 39,499,628 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01245,199,012 - 45,221,507 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1245,199,577 - 45,221,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01247,018,834 - 47,040,899 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,668,710 - 40,690,008 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11240,451,775 - 40,553,269 (+)NCBI
Celera1241,116,885 - 41,139,337 (+)NCBICelera
Cytogenetic Map12q16NCBI
Suds3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545512,981,194 - 13,017,194 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545512,981,899 - 13,017,194 (-)NCBIChiLan1.0ChiLan1.0
SUDS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210126,443,284 - 126,484,583 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112126,439,663 - 126,480,962 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012115,957,736 - 115,999,217 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112119,336,258 - 119,377,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12119,336,258 - 119,377,030 (+)Ensemblpanpan1.1panPan2
SUDS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12614,716,759 - 14,749,475 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2614,716,562 - 15,019,622 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2614,715,947 - 14,748,653 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02614,978,714 - 15,011,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2614,978,505 - 15,281,788 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12614,943,664 - 14,976,339 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02615,016,048 - 15,048,712 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02615,057,467 - 15,090,172 (+)NCBIUU_Cfam_GSD_1.0
Suds3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118147,580,224 - 147,614,345 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366682,077,729 - 2,113,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366682,078,783 - 2,113,154 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUDS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1434,156,339 - 34,317,081 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11434,241,220 - 34,317,092 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21436,413,480 - 36,447,476 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUDS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111113,720,724 - 113,763,582 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11113,720,813 - 113,760,010 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037131,339,711 - 131,383,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021257376   ⟹   XP_021113035
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474715,104,630 - 15,138,809 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021113035 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016704
GenBank Protein JAO02090 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021113035   ⟸   XM_021257376
- UniProtKB: A0A0P6JXN3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011951 ENTREZGENE
Ensembl Transcript ENSHGLT00000016875 ENTREZGENE
InterPro Sds3 UniProtKB/TrEMBL
NCBI Gene Suds3 ENTREZGENE
PANTHER PTHR21964 UniProtKB/TrEMBL
  SIN3 HISTONE DEACETYLASE COREPRESSOR COMPLEX COMPONENT SDS3 UniProtKB/TrEMBL
Pfam Sds3 UniProtKB/TrEMBL
SMART Sds3 UniProtKB/TrEMBL
UniProt A0A0P6JXN3 ENTREZGENE, UniProtKB/TrEMBL