Gfi1b (growth factor independent 1B transcriptional repressor) - Rat Genome Database

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Gene: Gfi1b (growth factor independent 1B transcriptional repressor) Heterocephalus glaber
Analyze
Symbol: Gfi1b
Name: growth factor independent 1B transcriptional repressor
RGD ID: 18923599
Description: ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of granulocyte differentiation (ortholog); regulation of erythrocyte differentiation (ortholog); ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute lymphoblastic leukemia (ortholog); acute megakaryocytic leukemia (ortholog); FOUND IN nuclear matrix (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein Gfi-1b
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247603,446,028 - 3,454,818 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247603,446,028 - 3,454,818 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gfi1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247603,446,028 - 3,454,818 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247603,446,028 - 3,454,818 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GFI1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389132,945,531 - 132,993,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9132,944,000 - 132,991,687 (+)EnsemblGRCh38hg38GRCh38
GRCh379135,820,918 - 135,867,074 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369134,843,919 - 134,856,903 (+)NCBINCBI36Build 36hg18NCBI36
Build 349132,883,651 - 132,896,636NCBI
Celera9106,395,838 - 106,408,823 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9105,347,908 - 105,360,763 (+)NCBIHuRef
CHM1_19136,004,426 - 136,017,406 (+)NCBICHM1_1
T2T-CHM13v2.09145,157,346 - 145,209,367 (+)NCBIT2T-CHM13v2.0
Gfi1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39228,499,462 - 28,511,994 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl228,499,462 - 28,511,994 (-)EnsemblGRCm39 Ensembl
GRCm38228,609,450 - 28,621,982 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl228,609,450 - 28,621,982 (-)EnsemblGRCm38mm10GRCm38
MGSCv37228,464,970 - 28,477,502 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36228,431,466 - 28,443,953 (-)NCBIMGSCv36mm8
Celera228,313,956 - 28,326,488 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
Gfi1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8332,338,213 - 32,350,963 (-)NCBIGRCr8
mRatBN7.2311,940,232 - 11,952,989 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl311,940,233 - 11,952,942 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx315,012,664 - 15,025,303 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0323,597,615 - 23,610,254 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0321,852,075 - 21,864,709 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.037,190,721 - 7,203,444 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl37,190,722 - 7,203,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0312,540,994 - 12,553,716 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.437,598,772 - 7,611,402 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.137,599,577 - 7,605,032 (-)NCBI
Celera36,721,072 - 6,733,683 (-)NCBICelera
Cytogenetic Map3p12NCBI
Gfi1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,277,981 - 2,281,515 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,273,267 - 2,281,850 (+)NCBIChiLan1.0ChiLan1.0
GFI1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,363,078 - 6,376,517 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan196,365,415 - 6,378,854 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,061,236 - 104,113,208 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19132,692,343 - 132,742,326 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9132,692,343 - 132,742,326 (+)Ensemblpanpan1.1panPan2
GFI1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1951,380,697 - 51,394,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl951,380,696 - 51,392,812 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha950,643,918 - 50,674,158 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0952,273,983 - 52,304,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl952,273,980 - 52,278,963 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1951,052,489 - 51,082,796 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0951,376,978 - 51,407,295 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0951,456,418 - 51,486,732 (-)NCBIUU_Cfam_GSD_1.0
Gfi1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,639,690 - 199,649,460 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648719,414,135 - 19,417,465 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648719,414,135 - 19,417,465 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GFI1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,702,184 - 272,715,539 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,701,386 - 272,715,551 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21306,852,829 - 306,866,368 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GFI1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1125,145,194 - 5,158,659 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl125,145,844 - 5,150,274 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607910,500,764 - 10,505,862 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017227   ⟹   ENSHGLP00000017056
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247603,446,028 - 3,454,818 (-)Ensembl
RefSeq Acc Id: XM_004849028   ⟹   XP_004849085
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,446,028 - 3,454,818 (-)NCBI
RefSeq Acc Id: XM_004849029   ⟹   XP_004849086
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,446,028 - 3,451,828 (-)NCBI
RefSeq Acc Id: XM_004849030   ⟹   XP_004849087
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,446,028 - 3,454,818 (-)NCBI
RefSeq Acc Id: XM_004849031   ⟹   XP_004849088
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,446,028 - 3,454,818 (-)NCBI
RefSeq Acc Id: XM_013073573   ⟹   XP_012929027
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247603,446,028 - 3,449,453 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849085 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849086 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849087 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849088 (Get FASTA)   NCBI Sequence Viewer  
  XP_012929027 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017056
Reference Protein Sequences
RefSeq Acc Id: XP_004849088   ⟸   XM_004849031
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004849087   ⟸   XM_004849030
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004849085   ⟸   XM_004849028
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004849086   ⟸   XM_004849029
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012929027   ⟸   XM_013073573
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000017056   ⟸   ENSHGLT00000017227


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012212 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017227 ENTREZGENE
NCBI Gene Gfi1b ENTREZGENE