Gem (GTP binding protein overexpressed in skeletal muscle) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gem (GTP binding protein overexpressed in skeletal muscle) Heterocephalus glaber
Analyze
Symbol: Gem
Name: GTP binding protein overexpressed in skeletal muscle
RGD ID: 18923543
Description: ENCODES a protein that exhibits calcium channel regulator activity (inferred); calmodulin binding (inferred); GDP binding (inferred); INVOLVED IN chromosome organization (inferred); metaphase chromosome alignment (inferred); mitotic cell cycle (inferred); ASSOCIATED WITH genetic disease (ortholog); glaucoma (ortholog); megacolon (ortholog); FOUND IN cytoplasmic side of plasma membrane (inferred); midbody (inferred); mitotic spindle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GTP-binding protein GEM
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,654,130 - 1,666,540 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247631,654,369 - 1,666,538 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gem
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,654,130 - 1,666,540 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247631,654,369 - 1,666,538 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GEM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38894,249,253 - 94,262,319 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl894,249,253 - 94,262,350 (-)EnsemblGRCh38hg38GRCh38
GRCh37895,261,481 - 95,274,547 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36895,330,657 - 95,343,733 (-)NCBINCBI36Build 36hg18NCBI36
Build 34895,330,662 - 95,343,733NCBI
Celera891,447,594 - 91,460,660 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef890,470,565 - 90,483,631 (-)NCBIHuRef
CHM1_1895,301,787 - 95,314,853 (-)NCBICHM1_1
T2T-CHM13v2.0895,374,122 - 95,387,192 (-)NCBIT2T-CHM13v2.0
Gem
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,702,379 - 11,714,993 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl411,704,457 - 11,714,752 (+)EnsemblGRCm39 Ensembl
GRCm38411,704,447 - 11,714,993 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,704,457 - 11,714,752 (+)EnsemblGRCm38mm10GRCm38
MGSCv37411,631,594 - 11,642,140 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36411,631,604 - 11,641,899 (+)NCBIMGSCv36mm8
Celera411,515,538 - 11,526,084 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.34NCBI
Gem
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8530,011,641 - 30,022,554 (+)NCBIGRCr8
mRatBN7.2525,214,309 - 25,225,222 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl525,214,309 - 25,225,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx527,339,200 - 27,350,185 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,931,944 - 28,942,929 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,874,165 - 28,885,140 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0525,339,479 - 25,353,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl525,349,928 - 25,353,661 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0530,050,664 - 30,062,666 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4525,809,543 - 26,008,249 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1526,004,470 - 26,008,270 (+)NCBI
Celera524,546,414 - 24,557,484 (+)NCBICelera
Cytogenetic Map5q13NCBI
Gem
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,475,822 - 10,487,825 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,475,967 - 10,486,879 (-)NCBIChiLan1.0ChiLan1.0
GEM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,582,105 - 111,595,278 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1887,119,098 - 87,132,234 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0890,872,855 - 90,885,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1892,817,028 - 92,830,133 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl892,817,028 - 92,830,133 (-)Ensemblpanpan1.1panPan2
GEM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,016,543 - 39,037,761 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2939,025,483 - 39,037,403 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2939,177,842 - 39,199,013 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02939,220,477 - 39,241,164 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2939,229,312 - 39,239,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12939,234,088 - 39,255,249 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02939,229,276 - 39,250,433 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,670,894 - 39,692,020 (-)NCBIUU_Cfam_GSD_1.0
Gem
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,516,800 - 40,530,076 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365447,262,629 - 7,275,910 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365447,262,629 - 7,275,860 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GEM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,458,466 - 42,471,929 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1442,458,591 - 42,471,941 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,876,630 - 45,889,986 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GEM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,219,484 - 89,232,788 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl889,218,782 - 89,232,753 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603951,615,735 - 51,629,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000009252   ⟹   ENSHGLP00000009153
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247631,654,130 - 1,666,540 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000009253   ⟹   ENSHGLP00000009154
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247631,654,130 - 1,665,567 (-)Ensembl
RefSeq Acc Id: XM_004850107   ⟹   XP_004850164
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,654,369 - 1,666,538 (-)NCBI
RefSeq Acc Id: XM_021262642   ⟹   XP_021118301
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,654,369 - 1,666,209 (-)NCBI
RefSeq Acc Id: XM_021262643   ⟹   XP_021118302
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247631,654,369 - 1,666,218 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004850164 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118301 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118302 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB16387 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009153
  ENSHGLP00100055006
GenBank Protein JAO03153 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004850164   ⟸   XM_004850107
- Peptide Label: isoform X3
- UniProtKB: G5C4C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118302   ⟸   XM_021262643
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021118301   ⟸   XM_021262642
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000009153   ⟸   ENSHGLT00000009252
RefSeq Acc Id: ENSHGLP00000009154   ⟸   ENSHGLT00000009253


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006576 Ensembl, ENTREZGENE
  ENSHGLG00100007478 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000009252 ENTREZGENE
  ENSHGLT00100063603 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  RGK UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report hgl:101726155 UniProtKB/TrEMBL
NCBI Gene Gem ENTREZGENE
PANTHER GTP-BINDING PROTEIN GEM UniProtKB/TrEMBL
  RAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PIRSF GTP-binding_GEM UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt G5C4C6 ENTREZGENE, UniProtKB/TrEMBL