Sox14 (SRY-box transcription factor 14) - Rat Genome Database

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Gene: Sox14 (SRY-box transcription factor 14) Heterocephalus glaber
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Symbol: Sox14
Name: SRY-box transcription factor 14
RGD ID: 18923487
Description: ENCODES a protein that exhibits chromatin binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN entrainment of circadian clock (ortholog); regulation of neuron migration (ortholog); visual perception (ortholog); ASSOCIATED WITH genetic disease (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SRY-box 14; Transcription factor SOX-14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,278,020 - 14,279,496 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473014,278,017 - 14,279,929 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Sox14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,278,020 - 14,279,496 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473014,278,017 - 14,279,929 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SOX14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383137,764,315 - 137,766,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3137,764,315 - 137,766,334 (+)EnsemblGRCh38hg38GRCh38
GRCh373137,483,157 - 137,485,176 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363138,966,269 - 138,967,086 (+)NCBINCBI36Build 36hg18NCBI36
Build 343138,966,276 - 138,967,094NCBI
Celera3135,908,242 - 135,909,059 (+)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3134,857,756 - 134,859,798 (+)NCBIHuRef
CHM1_13137,446,570 - 137,448,612 (+)NCBICHM1_1
T2T-CHM13v2.03140,504,920 - 140,506,939 (+)NCBIT2T-CHM13v2.0
Sox14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,756,159 - 99,758,223 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,756,159 - 99,758,223 (-)EnsemblGRCm39 Ensembl
GRCm38999,874,106 - 99,876,170 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,874,106 - 99,876,170 (-)EnsemblGRCm38mm10GRCm38
MGSCv37999,774,525 - 99,776,589 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36999,683,458 - 99,685,588 (-)NCBIMGSCv36mm8
Celera999,403,683 - 99,405,756 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map952.11NCBI
Sox14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88109,301,290 - 109,303,226 (-)NCBIGRCr8
mRatBN7.28100,421,982 - 100,423,918 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,421,982 - 100,423,918 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8106,091,601 - 106,093,537 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08104,290,904 - 104,292,840 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08102,133,443 - 102,135,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08108,107,865 - 108,109,801 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8108,107,865 - 108,109,801 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08107,531,635 - 107,533,571 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48104,736,946 - 104,738,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18104,756,391 - 104,758,512 (-)NCBI
Celera899,822,896 - 99,824,832 (-)NCBICelera
Cytogenetic Map8q31NCBI
Sox14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555011,156,670 - 1,157,392 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555011,155,920 - 1,157,870 (-)NCBIChiLan1.0ChiLan1.0
SOX14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22135,669,985 - 135,672,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13135,674,714 - 135,676,733 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03134,792,491 - 134,794,370 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,244,595 - 142,246,625 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,245,082 - 142,245,804 (+)Ensemblpanpan1.1panPan2
SOX14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,079,534 - 34,081,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,080,037 - 34,080,759 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2334,064,692 - 34,065,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02334,611,946 - 34,612,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2334,611,946 - 34,612,668 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,293,518 - 34,294,378 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,359,188 - 34,360,048 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02334,610,280 - 34,611,140 (+)NCBIUU_Cfam_GSD_1.0
Sox14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560273,420,806 - 73,422,895 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936540161,124 - 161,846 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936540160,638 - 162,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOX14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1378,620,984 - 78,622,577 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11378,620,818 - 78,621,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,232,861 - 86,234,959 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOX14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11552,749,639 - 52,766,770 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1552,762,326 - 52,763,045 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604125,783,693 - 25,785,738 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000020018   ⟹   ENSHGLP00000019820
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473014,278,020 - 14,279,496 (+)Ensembl
RefSeq Acc Id: XM_021258440   ⟹   XP_021114099
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473014,278,017 - 14,279,929 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021114099 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06851 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019820
RefSeq Acc Id: XP_021114099   ⟸   XM_021258440
- UniProtKB: G5BC40 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000019820   ⟸   ENSHGLT00000020018


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014184 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020018 ENTREZGENE
Gene3D-CATH High mobility group box domain UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  SOX_fam UniProtKB/TrEMBL
NCBI Gene Sox14 ENTREZGENE
PANTHER SOX TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR SOX-14 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
  SOXp UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP HMG-box UniProtKB/TrEMBL
UniProt G5BC40 ENTREZGENE, UniProtKB/TrEMBL