Esyt2 (extended synaptotagmin 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Esyt2 (extended synaptotagmin 2) Heterocephalus glaber
Analyze
Symbol: Esyt2
Name: extended synaptotagmin 2
RGD ID: 18923458
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); schizophrenia (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Extended synaptotagmin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624800310,275 - 411,660 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624800310,362 - 413,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Esyt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624800310,275 - 411,660 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624800310,362 - 413,636 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ESYT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387158,730,997 - 158,829,509 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7158,730,995 - 158,830,253 (-)EnsemblGRCh38hg38GRCh38
GRCh377158,523,688 - 158,622,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367158,216,450 - 158,315,080 (-)NCBINCBI36Build 36hg18NCBI36
Celera7152,956,246 - 153,054,446 (-)NCBICelera
Cytogenetic Map7q36.3NCBI
HuRef7152,262,280 - 152,361,043 (-)NCBIHuRef
CHM1_17158,532,008 - 158,630,482 (-)NCBICHM1_1
T2T-CHM13v2.07159,954,852 - 160,053,446 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27157,728,008 - 157,826,023 (-)NCBI
Esyt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912116,242,903 - 116,354,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12116,244,816 - 116,354,670 (+)EnsemblGRCm39 Ensembl
GRCm3812116,279,283 - 116,390,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12116,281,196 - 116,391,050 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712117,519,695 - 117,611,571 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612110,482,451 - 110,573,901 (+)NCBIMGSCv36mm8
MGSCv3612116,723,231 - 116,815,107 (+)NCBIMGSCv36mm8
Cytogenetic Map12F2NCBI
cM Map1262.65NCBI
Esyt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86143,359,870 - 143,455,600 (+)NCBIGRCr8
mRatBN7.26137,219,653 - 137,312,590 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6137,219,707 - 137,312,590 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6140,655,026 - 140,747,900 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06137,279,460 - 137,372,479 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06137,827,394 - 137,920,275 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06144,156,021 - 144,248,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6144,156,175 - 144,245,545 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06153,092,679 - 153,184,797 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46143,566,626 - 143,657,881 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6134,884,876 - 134,977,669 (+)NCBICelera
Cytogenetic Map6q33NCBI
Esyt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955579971,653 - 1,022,661 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955579971,556 - 1,052,575 (-)NCBIChiLan1.0ChiLan1.0
ESYT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26195,225,524 - 195,323,926 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1747,235,790 - 47,334,166 (-)NCBINHGRI_mPanPan1
PanPan1.17162,006,323 - 162,102,994 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7162,009,537 - 162,104,844 (-)Ensemblpanpan1.1panPan2
ESYT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11620,719,115 - 20,802,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1620,718,499 - 20,811,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1621,223,940 - 21,305,821 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01622,450,105 - 22,533,819 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1622,450,113 - 22,542,245 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11620,817,634 - 20,899,737 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01621,401,967 - 21,484,081 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01621,456,093 - 21,538,247 (-)NCBIUU_Cfam_GSD_1.0
Esyt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118567,316 - 627,505 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936856641,138 - 695,188 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936856641,863 - 702,152 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ESYT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18565,145 - 643,307 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118565,137 - 643,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.218801,262 - 864,983 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ESYT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121126,757,748 - 126,792,986 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21126,754,260 - 126,793,320 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607223,156,031 - 23,214,766 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005966   ⟹   ENSHGLP00000005892
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624800310,275 - 411,660 (+)Ensembl
RefSeq Acc Id: XM_004860316   ⟹   XP_004860373
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624800310,370 - 413,631 (+)NCBI
RefSeq Acc Id: XM_004860317   ⟹   XP_004860374
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624800310,381 - 413,631 (+)NCBI
RefSeq Acc Id: XM_013078036   ⟹   XP_012933490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624800310,368 - 413,631 (+)NCBI
RefSeq Acc Id: XM_021240950   ⟹   XP_021096609
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624800310,372 - 413,631 (+)NCBI
RefSeq Acc Id: XM_021240951   ⟹   XP_021096610
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624800310,362 - 413,636 (+)NCBI
RefSeq Acc Id: XM_021240952   ⟹   XP_021096611
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624800310,362 - 403,359 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021096610   ⟸   XM_021240951
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021096611   ⟸   XM_021240952
- Peptide Label: isoform X6
RefSeq Acc Id: XP_012933490   ⟸   XM_013078036
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004860373   ⟸   XM_004860316
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021096609   ⟸   XM_021240950
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004860374   ⟸   XM_004860317
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000005892   ⟸   ENSHGLT00000005966


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004302 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005966 ENTREZGENE
NCBI Gene Esyt2 ENTREZGENE