Ubxn2b (UBX domain protein 2B) - Rat Genome Database

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Gene: Ubxn2b (UBX domain protein 2B) Heterocephalus glaber
Analyze
Symbol: Ubxn2b
Name: UBX domain protein 2B
RGD ID: 18923091
Description: ENCODES a protein that exhibits ubiquitin binding (inferred); INVOLVED IN establishment of mitotic spindle orientation (ortholog); negative regulation of protein localization to centrosome (ortholog); positive regulation of mitotic centrosome separation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN spindle pole centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UBX domain-containing protein 2B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474433,696,129 - 33,725,383 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474433,676,900 - 33,725,388 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ubxn2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474433,696,129 - 33,725,383 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474433,676,900 - 33,725,388 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UBXN2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38858,411,361 - 58,451,501 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl858,411,359 - 58,451,501 (+)EnsemblGRCh38hg38GRCh38
GRCh37859,323,920 - 59,364,060 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36859,486,377 - 59,526,614 (+)NCBINCBI36Build 36hg18NCBI36
Celera855,316,857 - 55,357,075 (+)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef854,811,019 - 54,851,280 (+)NCBIHuRef
CHM1_1859,375,721 - 59,415,949 (+)NCBICHM1_1
T2T-CHM13v2.0858,832,480 - 58,872,635 (+)NCBIT2T-CHM13v2.0
Ubxn2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3946,191,105 - 6,219,788 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl46,191,098 - 6,221,688 (+)EnsemblGRCm39 Ensembl
GRCm3846,191,105 - 6,219,788 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl46,191,098 - 6,221,688 (+)EnsemblGRCm38mm10GRCm38
MGSCv3746,118,252 - 6,146,935 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3646,118,252 - 6,146,935 (+)NCBIMGSCv36mm8
Celera46,110,040 - 6,138,678 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.91NCBI
Ubxn2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8524,101,187 - 24,129,205 (+)NCBIGRCr8
mRatBN7.2519,303,634 - 19,333,181 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl519,303,682 - 19,326,849 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx521,510,779 - 21,533,944 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0523,096,194 - 23,119,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0522,876,496 - 22,899,682 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0519,285,368 - 19,314,199 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl519,284,548 - 19,311,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0524,070,783 - 24,098,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4519,631,847 - 19,655,014 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1519,631,871 - 19,654,541 (+)NCBI
Celera518,604,281 - 18,627,448 (+)NCBICelera
Cytogenetic Map5q12NCBI
Ubxn2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545416,929,917 - 16,956,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545416,929,816 - 16,978,706 (+)NCBIChiLan1.0ChiLan1.0
UBXN2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2774,106,891 - 74,147,442 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1849,760,750 - 49,801,301 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0854,865,251 - 54,905,243 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1856,516,601 - 56,556,489 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl856,516,601 - 56,556,489 (+)Ensemblpanpan1.1panPan2
UBXN2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1299,229,070 - 9,258,269 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl299,228,985 - 9,259,372 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha299,541,980 - 9,571,171 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0299,314,507 - 9,343,660 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl299,314,521 - 9,343,656 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1299,312,339 - 9,341,685 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0299,438,305 - 9,467,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0299,717,333 - 9,746,587 (+)NCBIUU_Cfam_GSD_1.0
Ubxn2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530370,221,115 - 70,265,143 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364964,532,714 - 4,559,562 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364964,520,334 - 4,564,358 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBXN2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl474,405,902 - 74,437,615 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1474,405,876 - 74,437,650 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2481,200,231 - 81,232,255 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBXN2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1854,397,523 - 54,436,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl854,397,601 - 54,432,523 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603987,290,626 - 87,329,624 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021376   ⟹   ENSHGLP00000021173
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474433,696,129 - 33,725,383 (-)Ensembl
RefSeq Acc Id: XM_004842152   ⟹   XP_004842209
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474433,693,234 - 33,725,388 (-)NCBI
RefSeq Acc Id: XM_021256096   ⟹   XP_021111755
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474433,693,234 - 33,725,388 (-)NCBI
RefSeq Acc Id: XR_002393956
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474433,676,900 - 33,725,388 (-)NCBI
RefSeq Acc Id: XR_002393957
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474433,676,900 - 33,725,388 (-)NCBI
RefSeq Acc Id: XR_002393958
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474433,676,900 - 33,725,388 (-)NCBI
RefSeq Acc Id: XR_205129
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474433,676,900 - 33,725,388 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842209 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111755 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021173
Reference Protein Sequences
RefSeq Acc Id: XP_021111755   ⟸   XM_021256096
- UniProtKB: G5B703 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842209   ⟸   XM_004842152
- UniProtKB: G5B703 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021173   ⟸   ENSHGLT00000021376


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015127 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021376 ENTREZGENE
Gene3D-CATH SEP domain UniProtKB/TrEMBL
InterPro NSFL1C_SEP_dom_sf UniProtKB/TrEMBL
  SEP_domain UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  UBX_dom UniProtKB/TrEMBL
NCBI Gene Ubxn2b ENTREZGENE
PANTHER UBX DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  UBX DOMAIN-CONTAINING PROTEIN 2B UniProtKB/TrEMBL
Pfam SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
PROSITE SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
SMART SEP UniProtKB/TrEMBL
  UBX UniProtKB/TrEMBL
Superfamily-SCOP NSFL1 (p97 ATPase) cofactor p47, SEP domain UniProtKB/TrEMBL
  Ubiquitin-like UniProtKB/TrEMBL
UniProt G5B703 ENTREZGENE, UniProtKB/TrEMBL