Abitram (Heterocephalus glaber - naked mole-rat) |
|
ABITRAM (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 9 | 108,934,400 - 108,950,744 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 108,934,400 - 108,950,744 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 111,696,680 - 111,703,234 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 9 | 110,736,282 - 110,743,059 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 9 | 82,195,874 - 82,202,439 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q31.3 | NCBI | | | | | HuRef | 9 | 81,296,323 - 81,302,888 (+) | NCBI | | HuRef | | | CHM1_1 | 9 | 111,843,188 - 111,849,757 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 121,103,474 - 121,119,817 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Abitram (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCm39 | 4 | 56,802,329 - 56,809,605 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 4 | 56,802,345 - 56,809,601 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 4 | 56,802,329 - 56,809,605 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 4 | 56,802,345 - 56,809,601 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 4 | 56,815,201 - 56,822,477 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 4 | 56,896,383 - 56,903,659 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 4 | 56,710,222 - 56,717,498 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | B3 | NCBI | | | | | cM Map | 4 | 31.66 | NCBI | | | | |
|
Abitram (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 5 | 76,301,054 - 76,308,140 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 5 | 71,505,848 - 71,524,224 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 71,505,813 - 71,511,890 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 5 | 73,393,341 - 73,400,434 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 5 | 75,224,769 - 75,231,874 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 5 | 75,196,845 - 75,203,950 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 5 | 73,552,952 - 73,560,240 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 73,552,983 - 73,556,987 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 77,710,873 - 77,716,094 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 5 | 74,707,760 - 74,711,596 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 5 | 70,359,863 - 70,367,151 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q24 | NCBI | | | | |
|
Abitram (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955419 | 18,030,040 - 18,034,799 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955419 | 18,029,763 - 18,034,945 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
ABITRAM (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 11 | 30,459,146 - 30,475,410 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 9 | 30,460,732 - 30,477,843 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 9 | 80,085,138 - 80,101,685 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 9 | 108,258,285 - 108,265,043 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 9 | 108,258,285 - 108,274,538 (+) | Ensembl | panpan1.1 | | panPan2 | |
|
ABITRAM (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 11 | 64,094,653 - 64,100,078 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 11 | 64,094,721 - 64,109,421 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 11 | 62,496,702 - 62,503,032 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 11 | 65,228,862 - 65,235,193 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 11 | 65,228,853 - 65,243,616 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 11 | 63,749,784 - 63,756,116 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 11 | 63,768,955 - 63,775,287 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 11 | 64,461,587 - 64,467,917 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Abitram (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404947 | 179,342,234 - 179,349,383 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936559 | 3,918,557 - 3,924,155 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936559 | 3,918,108 - 3,924,371 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
ABITRAM (Sus scrofa - pig) |
|
ABITRAM (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 12 | 30,613,913 - 30,620,475 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 12 | 30,615,038 - 30,620,201 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666035 | 12,063,629 - 12,070,320 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|